NONHSAT056687
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056687 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1110 nt |
Genomic location |
chr17-:80344753..80346570 |
Exon number |
2 |
Exons |
80344753..80345506,80346215..80346570 |
Genome context |
|
Sequence |
000001 GGAAAGCCGT CCATTTTTAT GTATGGGAGA CTCGTTTTCA AAGGAAGGGA AACGGGCGTG ACCCTCCCAT CATTGGTCCC 000080
000081 ATCCCGGAAG ACTCGTCACC ATGGCCAGCC TGGAGCTGAC TCTGTGTGGT GTGTGGGTCA CTGCCAGGAA CCCACGTGGC 000160 000161 AGCCACCTCT CACCCCACCA TGGTCACAGC CCTGGTGTGC AGCGTGGTGG CCTCTGCTCC CTCCACCTTC TCTCTTGATG 000240 000241 GGGACCCTGG CCCGGCTCTG CCCAGCCCTG CTGTGCTTAT CACCGAGATG GGAGCCAAGG GCCTGAGACA CCAGCGGTGT 000320 000321 GTGCCACGCC CACTCGCCAC CTGGCACGTC TCCCAGAACA TCAACGAAGC ACGAGGCAGG AAGAGGACGA AACAGGAACA 000400 000401 GCAGACGAGG AGGAGCTGAG GAGGCCCCTG TGCCTGCAGC AGTGAAAATG GATCCCGAGG CTCCTCGTGT TGGGGAAGAG 000480 000481 GACGTGGGGT CCCCCGCAAG CCAGTCCATC TCCGTGTCGT TCTGGGGACG CCGGACACAT ACTGGAAATA TCCGAGTTTC 000560 000561 GGGAGAAGAG CGGGTCAGGC CCCTCGCCGT CCCCTGGACT CACTTTGCAT GGCTGCACCT TCCTCCCCAG GAAGGGGCCC 000640 000641 CGTGGCTCCT GTCTAGCGTC CCGGGAGCCG GCCACACCCT GCCGAGACAC ACCTTCTTTC TGCGTGGTCT GGGCCCCTTC 000720 000721 TCCGTGTGTC TCTGTCCTTC CTGTCTGCTC CCAGCCCCAG CGTAGGGTGG GGATCAGGTC CTGGCCGGCT TAGGGCAATG 000800 000801 CCAGGCAGCA GCCGCTCCCT CACAGACCCC AGGCTCCCAG CAGAACCTCC GGCGGCTCAC CCTTGGGGGC TGGCCCCACC 000880 000881 CCGCCTGCCA GCATGCCCTG CCTAGAGGGC AGGGGAGGGT CTGTGGCTGG AGACCAGGGC GGGTGCTCCG GGGAGGGTCT 000960 000961 GTGGCTGGAG ACCAGGGTGG GTGCTCGGGC CCCTGACAGA CCCTACCTGG GCTTTCCTTC CCCCGTAGCC CCTTGTGAGG 001040 001041 CCAGGCCAGG CTCACTGTCC CCACGTGCCC CTCGGCCCTG GGACCCCGCA CCCAGGCCCT CCTGCTAGCC |
Predicted Small Protein
Name | NONHSAT056687_smProtein_179:418 |
Length | 80 |
Molecular weight | 8563.7543 |
Aromaticity | 0.0253164556962 |
Instability index | 73.9481012658 |
Isoelectric point | 10.7827758789 |
Runs | 15 |
Runs residual | 0.0495925091035 |
Runs probability | 0.0398928340105 |
Amino acid sequence | MVTALVCSVVASAPSTFSLDGDPGPALPSPAVLITEMGAKGLRHQRCVPRPLATWHVSQN INEARGRKRTKQEQQTRRS |
Secondary structure | LEEEEEEEEEELLLLLEELLLLLLLLLLLLLEEEELLLLLLLLLLEELLLLLLLLEELLL HHHHLLLLLLHHHHLLLLL |
PRMN | - |
PiMo | - |