NONHSAT058912
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058912 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1817 nt |
Genomic location |
chr18+:32848504..32850202 |
Exon number |
1 |
Exons |
32848504..32850202 |
Genome context |
|
Sequence |
000001 GCGAGCGGCG CCCAGATGGT TCAAACATCA TAAAAACAAC AGTGTTTCAG GAGACGGAAC ACTGTTGCTT TGCTGCAGAG 000080
000081 AGCCGAAAGA GGGTGAGAAC TAAGCTGATG GTGGAATTTG GGGGAATGAC AGAGGAGGGC AAGAGAGAGA GATGTTACCT 000160 000161 GTGGACTGTC CTTTCGAGTG GTTCAGAAGA GTTGGTAAGA CTAAAAATAG ACAATAATCT CTTTTGAGAA TTGTGATACT 000240 000241 GCAAGAAAAG AAAAAGAATA TTGGTTGAAC TAAGCAACCG GATTTAAAGT ATTCTTATTT TCAAGGGTAG TGGAAAGCTA 000320 000321 ATTTGTAGAA AAGAAAAGGT AAAGTTTAGT AGGCACAAGA AATTGAAGAT GGAAGAAAAG AGATACAGCT GATGGGGAGG 000400 000401 AAATGAGACC AGATGGGCTG GTGAAGTAGT TTGTCTCAGA AAAGAAGGAA GTGATTTGTT CCTGAATAGG AGGAAAGTGG 000480 000481 AGGGTGAGTG CAAGAGAAAA GGGAGAAGTT GAAGATGTTT ATGTCAGATG ACTCTGACCA CAAAGGTGTT AATCAGAAGA 000560 000561 TGTTACAGTT GAGCCAGACT TTGAAGAATG TTACAACGGC CAATGACTGG AAGAGACGAC TTCAAGTGAT GTTCTGTATC 000640 000641 TACTATCCAA TATGGAAGCC ATTAGCCATT TATGGCTATG TGTAGGAAAG CTGCCTGTTG CATGGCAAGA GTAATGCTAT 000720 000721 CTTGAAGTGA AACATCATAA TAACCAGTGT TTGACTCTTG CATACCAAGG CATTCCCCCA GCAAGGTGAA GAAACAATGC 000800 000801 CTATAACATA GATAACCCCT CATAAAGAAA CAATACCTGT AGCATAGAAA ACCCCTCATA AAGATCCTTA TCTAATTTTC 000880 000881 CCACTGGTCA GAGTTTTGCA AGAGGGTCTC AGACATGACA AGCTGCACAT GTTTTACCAA AAAAAAAAAA AAAAAGCTTG 000960 000961 CAATAGAAAG AATAATATCT GCAGGGCAGG TATGGGGATC CACCATCTTA AGTCCTTTTA TCCCTACCAA ATGTTTCCTT 001040 001041 CTGAGAAACT GCATTTGTCA GCTCAGCTCT CTCAACCTCT GGGAGTAGGT TTACATATAT TTGCTCACTT GATATATGGC 001120 001121 TGATAGGAAC TGAGCAAGTA AAATTTTCAT TTCATTGAAT TTTAATTAAT TTACATTTAA ATTGCTACAT GGGATTAGTG 001200 001201 GTTCCATACT AGACAGTGAA GCTAGCCTGT ACTTGTTAAA AAGAACCCAA TGTGTGAAAT GAACAAAGTA AACATAGCAC 001280 001281 ATTTCTAATG AAGCACATAA AATAATGAGT GGCCAAAAAA AAAAAAAAAG ACTGTAAAGT TGTCTTCTAT GTAAAAAGTC 001360 001361 CATAAGGTTT ATACACAGAA CATACTCAAT TTGTTCATTC CCTTAAAGGA TCTAGCAACA CACTTTTTAA TGTAAGTACC 001440 001441 CAATTTCCCC ATTTTTAATG AACAGATGAA TACCAGTATC TGCTAACACT GTGGGGTGGG GAGGGGAGAG TGATATATAC 001520 001521 CTAAGAAAAT TAGCAACTTC ATCAATAATA AACACTTCTC TATCATTTAT TTATTTTCTT TTAAAAAATG TATTAACACC 001600 001601 TGAATAATGC ATCGATTTTA GATAATGAAG TATCAATTTT GGTCAACTAA TTTTGACAAA TATGTCACAT CAGTGAAAGA 001680 001681 TGTTAATAAA AAGAAATGAA TGCGAAAGTA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001760 001761 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT058912_smProtein_914:1087 |
Length | 58 |
Molecular weight | 6479.788 |
Aromaticity | 0.0877192982456 |
Instability index | 49.0456140351 |
Isoelectric point | 9.60101318359 |
Runs | 11 |
Runs residual | 0.0390350877193 |
Runs probability | 0.0389105683223 |
Amino acid sequence | MTSCTCFTKKKKKKLAIERIISAGQVWGSTILSPFIPTKCFLLRNCICQLSSLNLWE |
Secondary structure | LLLLLLLLHHHLHHHHHHHHHHLLLEEELEELLLLLLLHHHHHHHHHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooo |