NONHSAT059496

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT059496

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2743 nt

Genomic location

chr18+:56057296..56065389

Exon number

3

Exons

56057296..56057974,56058719..56058791,56063399..56065389

Genome context

Sequence
000001 CACTTGGCTT GTTTTAGATG TTTGCCTACA GCAGTCCAAG TGGCATTACC AGTAAAGCCA CCTGGATTCC CATAATAATG 000080
000081 CAGATATGTA AGATACACAG ATTATTTTAG AACCCCATCT TTGCCTTTGt tgttttgttt ttgttttgtt ttgttttgtt 000160
000161 tcattttATA AAATGATGTC TTCTAGGGAA CGTGTCTACA ATCTGAAATC CCATCTCATA ACCTGGCTTC CCCTTGTGAT 000240
000241 GACAAATCTT AAATACTGTA TATTTATAAT TGGCTTAGGG GGAACTGGTA AGCCTCGAAC ACAGAAACAT GAGCTTGGTG 000320
000321 CCATCAGAGA GTTTGCTTTT TATATCATTT ATTTTGGCCT ATTGGCAGAA GAAGAAAGAG ACGGACATTG TGATCACTCA 000400
000401 GTCTCTTAGA TTAGAGAGGC CAGCTAGTAT TGTGGCCATA AAAAACCTAC TCAGTTTTCA GAGTCAACTG TCTAGGTCTT 000480
000481 ACATTGCAAT ATAAATAAGA TTAAGTTCTG CCTGCCTGCA TGACAGCAGC ATGTGCCATG GGTCACGTGG GGGGTATAAT 000560
000561 GACCTTCTGC CTCTGTTCAT AGGCTGTGCT ACTCATGGAC GCCGAAAAGC GTATCCGGTT ACTGCAGTTT GTCACAGGGA 000640
000641 CATCGCGAGT ACCTATGAAT GGATTTGCCG AACTTTATGG TTCCAATGGT CCTCAGCTGT TTACAATAGA GCAATGGGGC 000720
000721 AGTCCTGAGA AACTGCCCAG AGCTCACACA TGCTTTAATC GCCTTGACTT ACCTCCATAT GAAACCTTTG AAGATTTACG 000800
000801 AGAGAAACTT CTCATGGCCG TGGAAAATGC TCAAGGATTT GAAGGGGTGG ATTAAGCACC CTGTGCCTCG GGGGTGGTTG 000880
000881 TTCTTCAAGC AAGTTCTGCT TGCACTTTTG CATTTGCCTA ACAGACTTTT GCAGAGGCGA TGGCAGAGAG CAGCTGCAGG 000960
000961 CATGGTCCCT GGAGCCGAGC CTTCACCACG CACTCGTCCA AGTTCGGATG CGGGAACCTG GTCCCAGCTT GAGTTCCTGC 001040
001041 CTTTCCCACC ACAAATTATC AACTGGTTGA TGTGTACACT AATTACATTT CAGGAGGACT TAATGCTATT TATGTTGTGC 001120
001121 CTCTGCAGGC AAAGCCCTTA ATAAATATTT TACATCCTTT CTAATGACAA TGAATGGAAT TAATCACTCA ACAGGTATAG 001200
001201 TATTACGACT CATGTTTACT TTTTAAAATG ATTTAGACCG ATTTTCAGAT TTTATTTCGT TATGATTAAA GATGTCTCAT 001280
001281 GTACTTGGAA AAGTGAGCAT TTTTTTTTTT TTTGTATTTC ACTTTCATAC CAGGCTTAAT GTCAATGACA TTTTTATTTT 001360
001361 TGAAGTACTC TGACACCTCC ACCCTCTACT TTATTAGAAT TGGAAGGCAA ATTTTTGTCC AAAAACCTAC AGACAAGTAC 001440
001441 TTTGAGAGAA TTTCCAATAT AATATTAGAC ATAATGATAA TTTTTTCCAT ACTCAGAATG AAAAACTGGA TATTACGTTT 001520
001521 TTGTTTTGGG GTTTTTTTGT ACAAATTTAG CTAATAGCTA CAGGCTGAGA GAATTGTAAC ATAGCATGAC AAATTTTGTG 001600
001601 TTGACTTGAA AGGAATCACA CCATTATTCC TTAGAAGTAA TTACATGTGT TCTAACACAT TTGAGACAGG GTTGGACTCC 001680
001681 CATTTCTCAT CCGAGAAATT ACTTAACCCT TCCTGGCGCT GTACAGTCAT CTTTTATTCT ATTTCCTCTT TGCTGTTTGT 001760
001761 AGTAGAGACA TTTTGAATGA AACTTGGCAC TGCTTGATTC AAAACTGTGG AAACCAGATC TGTTTAGTCT CCTGTTTGTA 001840
001841 TGCGTTTGCT AATGGTAGCT AAATAACCAG TTTTTGTTGT AAATGCACCA ATTCTGAAGG CACTTTATGT ACTACATGGA 001920
001921 GGTCATATCT GGTTTTGTTT TTATTTTTTT ATCATGAACA TTAAATGTGA TGATGATTTC TTTTCCCTGC ACACATCTTT 002000
002001 CCGGTGCAAT ATCTATCAAT TGTGAATCTG GCTGCTGGTG TATAAAAACC TGGATGTAAA GCTGAGCCTA CAGACCTGTC 002080
002081 CTCACCAACT GTTTTGTGAT TTCTACTCAA CTACAAAGAT TTATTTAATG TACTCTTAAT CTAACTGAGT TTTGTTACCA 002160
002161 ATGACCTGTT GCATGCTTCA ATACCGTGTA CTGCCTGAGT TGTGCCTCTT GTGTGCTAGA TTAAAAGTGA GACAGAGACT 002240
002241 TGACTTGATC CTCTGAGCTC AAGCTATTGA GCTGGTAGTG GCAGAGGACT GAGGGTACCT GCACAGTTTG ATTCTTTTCC 002320
002321 ACGTGTAAGT CTCCATTGCA GAATTGTCGT GCTTTGAGAA AACACCTGAG GCAGTGTGGG AGTTGAACGA CCCTGCTGTC 002400
002401 CTTTTTAACC TGTGTTGTCC TAGACCCTGT CGGGGCAGTC AGGGGACACT AGAGATTTGA TCTCATGCGA GTCATCAATA 002480
002481 GGACAAAAAA GTTGTGGTTT GGGGAGGTCT GTTTGTTACA TAAAAAGGAC CTTTCGGTGT AAGAAATTGC CGTTTTTACC 002560
002561 CTGCCCTGGC TGGCATGTGA GAAGCCATGG AAGGTTGTGG TTGTAAATGA GTTGTCTAAA GGGGTGCAGA GGCCTGAGGT 002640
002641 TTCTAAAAGA AGGTAGATTT CTACAGAGCT GAGTGTTGGT TCCTTTTTCT TATTGGTTGA AAATTACCTG GTAGTGATCA 002720
002721 GAAAACTTAG ATGCTATGTA ACT
[back to top]

Predicted Small Protein

Name NONHSAT059496_smProtein_530:727
Length 66
Molecular weight 7411.4097
Aromaticity 0.138461538462
Instability index 43.0
Isoelectric point 9.16131591797
Runs 8
Runs residual 0.0272115384615
Runs probability 0.0416887475712
Amino acid sequence MCHGSRGGYNDLLPLFIGCATHGRRKAYPVTAVCHRDIASTYEWICRTLWFQWSSAVYNR
AMGQS
Secondary structure LLLLLLLLLLLHHHHEEEELLLLLLLLLLEEEEELHHHHHHHHHHHHHHHHHHHHHHHHH
HHLLL
PRMN -
PiMo -