NONHSAT059496
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT059496 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2743 nt |
Genomic location |
chr18+:56057296..56065389 |
Exon number |
3 |
Exons |
56057296..56057974,56058719..56058791,56063399..56065389 |
Genome context |
|
Sequence |
000001 CACTTGGCTT GTTTTAGATG TTTGCCTACA GCAGTCCAAG TGGCATTACC AGTAAAGCCA CCTGGATTCC CATAATAATG 000080
000081 CAGATATGTA AGATACACAG ATTATTTTAG AACCCCATCT TTGCCTTTGt tgttttgttt ttgttttgtt ttgttttgtt 000160 000161 tcattttATA AAATGATGTC TTCTAGGGAA CGTGTCTACA ATCTGAAATC CCATCTCATA ACCTGGCTTC CCCTTGTGAT 000240 000241 GACAAATCTT AAATACTGTA TATTTATAAT TGGCTTAGGG GGAACTGGTA AGCCTCGAAC ACAGAAACAT GAGCTTGGTG 000320 000321 CCATCAGAGA GTTTGCTTTT TATATCATTT ATTTTGGCCT ATTGGCAGAA GAAGAAAGAG ACGGACATTG TGATCACTCA 000400 000401 GTCTCTTAGA TTAGAGAGGC CAGCTAGTAT TGTGGCCATA AAAAACCTAC TCAGTTTTCA GAGTCAACTG TCTAGGTCTT 000480 000481 ACATTGCAAT ATAAATAAGA TTAAGTTCTG CCTGCCTGCA TGACAGCAGC ATGTGCCATG GGTCACGTGG GGGGTATAAT 000560 000561 GACCTTCTGC CTCTGTTCAT AGGCTGTGCT ACTCATGGAC GCCGAAAAGC GTATCCGGTT ACTGCAGTTT GTCACAGGGA 000640 000641 CATCGCGAGT ACCTATGAAT GGATTTGCCG AACTTTATGG TTCCAATGGT CCTCAGCTGT TTACAATAGA GCAATGGGGC 000720 000721 AGTCCTGAGA AACTGCCCAG AGCTCACACA TGCTTTAATC GCCTTGACTT ACCTCCATAT GAAACCTTTG AAGATTTACG 000800 000801 AGAGAAACTT CTCATGGCCG TGGAAAATGC TCAAGGATTT GAAGGGGTGG ATTAAGCACC CTGTGCCTCG GGGGTGGTTG 000880 000881 TTCTTCAAGC AAGTTCTGCT TGCACTTTTG CATTTGCCTA ACAGACTTTT GCAGAGGCGA TGGCAGAGAG CAGCTGCAGG 000960 000961 CATGGTCCCT GGAGCCGAGC CTTCACCACG CACTCGTCCA AGTTCGGATG CGGGAACCTG GTCCCAGCTT GAGTTCCTGC 001040 001041 CTTTCCCACC ACAAATTATC AACTGGTTGA TGTGTACACT AATTACATTT CAGGAGGACT TAATGCTATT TATGTTGTGC 001120 001121 CTCTGCAGGC AAAGCCCTTA ATAAATATTT TACATCCTTT CTAATGACAA TGAATGGAAT TAATCACTCA ACAGGTATAG 001200 001201 TATTACGACT CATGTTTACT TTTTAAAATG ATTTAGACCG ATTTTCAGAT TTTATTTCGT TATGATTAAA GATGTCTCAT 001280 001281 GTACTTGGAA AAGTGAGCAT TTTTTTTTTT TTTGTATTTC ACTTTCATAC CAGGCTTAAT GTCAATGACA TTTTTATTTT 001360 001361 TGAAGTACTC TGACACCTCC ACCCTCTACT TTATTAGAAT TGGAAGGCAA ATTTTTGTCC AAAAACCTAC AGACAAGTAC 001440 001441 TTTGAGAGAA TTTCCAATAT AATATTAGAC ATAATGATAA TTTTTTCCAT ACTCAGAATG AAAAACTGGA TATTACGTTT 001520 001521 TTGTTTTGGG GTTTTTTTGT ACAAATTTAG CTAATAGCTA CAGGCTGAGA GAATTGTAAC ATAGCATGAC AAATTTTGTG 001600 001601 TTGACTTGAA AGGAATCACA CCATTATTCC TTAGAAGTAA TTACATGTGT TCTAACACAT TTGAGACAGG GTTGGACTCC 001680 001681 CATTTCTCAT CCGAGAAATT ACTTAACCCT TCCTGGCGCT GTACAGTCAT CTTTTATTCT ATTTCCTCTT TGCTGTTTGT 001760 001761 AGTAGAGACA TTTTGAATGA AACTTGGCAC TGCTTGATTC AAAACTGTGG AAACCAGATC TGTTTAGTCT CCTGTTTGTA 001840 001841 TGCGTTTGCT AATGGTAGCT AAATAACCAG TTTTTGTTGT AAATGCACCA ATTCTGAAGG CACTTTATGT ACTACATGGA 001920 001921 GGTCATATCT GGTTTTGTTT TTATTTTTTT ATCATGAACA TTAAATGTGA TGATGATTTC TTTTCCCTGC ACACATCTTT 002000 002001 CCGGTGCAAT ATCTATCAAT TGTGAATCTG GCTGCTGGTG TATAAAAACC TGGATGTAAA GCTGAGCCTA CAGACCTGTC 002080 002081 CTCACCAACT GTTTTGTGAT TTCTACTCAA CTACAAAGAT TTATTTAATG TACTCTTAAT CTAACTGAGT TTTGTTACCA 002160 002161 ATGACCTGTT GCATGCTTCA ATACCGTGTA CTGCCTGAGT TGTGCCTCTT GTGTGCTAGA TTAAAAGTGA GACAGAGACT 002240 002241 TGACTTGATC CTCTGAGCTC AAGCTATTGA GCTGGTAGTG GCAGAGGACT GAGGGTACCT GCACAGTTTG ATTCTTTTCC 002320 002321 ACGTGTAAGT CTCCATTGCA GAATTGTCGT GCTTTGAGAA AACACCTGAG GCAGTGTGGG AGTTGAACGA CCCTGCTGTC 002400 002401 CTTTTTAACC TGTGTTGTCC TAGACCCTGT CGGGGCAGTC AGGGGACACT AGAGATTTGA TCTCATGCGA GTCATCAATA 002480 002481 GGACAAAAAA GTTGTGGTTT GGGGAGGTCT GTTTGTTACA TAAAAAGGAC CTTTCGGTGT AAGAAATTGC CGTTTTTACC 002560 002561 CTGCCCTGGC TGGCATGTGA GAAGCCATGG AAGGTTGTGG TTGTAAATGA GTTGTCTAAA GGGGTGCAGA GGCCTGAGGT 002640 002641 TTCTAAAAGA AGGTAGATTT CTACAGAGCT GAGTGTTGGT TCCTTTTTCT TATTGGTTGA AAATTACCTG GTAGTGATCA 002720 002721 GAAAACTTAG ATGCTATGTA ACT |
Predicted Small Protein
Name | NONHSAT059496_smProtein_530:727 |
Length | 66 |
Molecular weight | 7411.4097 |
Aromaticity | 0.138461538462 |
Instability index | 43.0 |
Isoelectric point | 9.16131591797 |
Runs | 8 |
Runs residual | 0.0272115384615 |
Runs probability | 0.0416887475712 |
Amino acid sequence | MCHGSRGGYNDLLPLFIGCATHGRRKAYPVTAVCHRDIASTYEWICRTLWFQWSSAVYNR AMGQS |
Secondary structure | LLLLLLLLLLLHHHHEEEELLLLLLLLLLEEEEELHHHHHHHHHHHHHHHHHHHHHHHHH HHLLL |
PRMN | - |
PiMo | - |