NONHSAT059665
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059665 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1672 nt |
Genomic location |
chr18-:61063823..61089696 |
Exon number |
8 |
Exons |
61063823..61064486,61066475..61066556,61067281..61067429,61067780..61067936,61070940..61071059,61077523..61077679,61078700..61078811,61089466..61089696 |
Genome context |
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Sequence |
000001 ATTGCGGAAG TTTGGTGGGG AGGGTCGGAG CTCTGGTGGA GAGAGTGTTG TCTAAAACAA GTTCCGGAAG GGAGGCTGCC 000080
000081 CTTCGCGGTC CGAGAACCAC CGGCCTCCCC AGTTTGAGGG CTGTTACCCC GTGCGCGCTT CGACGTTGCT GCTGTTGGCT 000160 000161 CTCCTCGCCC CTCGTTCCCT TGGGAACCGC CTGGGAACTC CGCCATGTCA TCCACTTCGC CCAACCTCCA GAAAGCGATA 000240 000241 GATCTGGCTA GCAAAGCAGC GCAAGAAGAC AAGGCTGGGA ACTACGAAGA AGCCCTTCAG CTCTATCAGC ATGCTGTGCA 000320 000321 GTATTTTCTT CATGTCGTTA AATATGAAGC ACAGGGTGAT AAAGCCAAGC AAAGTATCAG GGCAAAGTGT ACAGAATATC 000400 000401 TTGATAGAGC AGAAAAACTA AAGGAGTACC TGAAAAATAA AGAGAAAAAA GCACAGAAGC CAGTGAAAGA AGGACAGCCG 000480 000481 AGTCCAGCAG ATGAGAAGGG GTGCCATTGT TATAGAACGA CCAAATGTGA AATGGAGTGA CGTTGCTGGA CTTGAAGGAG 000560 000561 CCAAAGAAGC ACTGAAAGAG GCTGTGATAC TGCCTATTAA ATTTCCTCAT CTTTTTACAG GCAAGAGAAC ACCTTGGAGG 000640 000641 GGAATCCTAT TATTTGGGCC GCCTGGAACA GGAAAGTCCT ACTTAGCCAA AGCTGTAGCA ACAGAAGCCA ACAACTCAAC 000720 000721 ATTTTTTTCA ATATCTTCCT CTGATCTTGT TTCTAAGTGG CTAGGTGAAA GTGAAAAACT GGTTAAGAAT TTATTCCAAC 000800 000801 TTGCCAGAGA GAACAAGCCC TCCATTATCT TCATTGATGA AATTGATTCT CTCTGTGGTT CAAGAAGTGA AAATGAAAGT 000880 000881 GAAGCCGCAC GTAGAATTAA GACGGAGTTC CTAGTGCAAA TGCAAGGGGT TGGTGTAGAC AATGATGGAA TTTTGGTTCT 000960 000961 GGGAGCTACA AATATACCCT GGGTTCTGGA TTCTGCCATT AGGCGAAGAT TTGAGAAACG AATTTATATT CCCTTGCCGG 001040 001041 AACCCCATGC CCGAGCAGCA ATGTTTAAAC TGCACCTAGG GACCACTCAG AACAGTCTCA CGGAAGCAGA CTTTCGGGAA 001120 001121 CTTGGGAGGA AAACAGATGG TTATTCAGGG GCAGATATAA GTATCATTGT ACGTGATGCC CTTATGCAGC CTGTTAGGAA 001200 001201 AGTACAGTCA GCTACTCATT TTAAAAAGGT AAGTCATTTT TATCTATCCT TTCCTATCtt tttttttttt ttttgagaca 001280 001281 gtctcactct gttgcccagg ctggagtgca gtggcactat ctgggcttgc tgcaacctcc gcctcccggg ttcaagcaat 001360 001361 tctcatgcct tagcctcctg agtagctgga attacaggcg tgtgccacca cgcctggcta attttttgta tttttagtag 001440 001441 agacaggatt tcaccatgtt ggccaggctg gtctcgaact cctgactcca ggtgatccac ccacctcggc ctcccaaagg 001520 001521 cgtgagccac tgcgcctggc cCTTTTCCTG TATTTTTAAA ATCAAGTTTC AAGACCGTCA TTGGTTTGTC TTCAAAGAAT 001600 001601 TTGGGAGGAT TTCAGTGTTG TATAATAATA CCATAAGTGG GTTTACATAA TAGACATATT TCTGTGTCAC TG |
Predicted Small Protein
Name | NONHSAT059665_smProtein_941:1078 |
Length | 46 |
Molecular weight | 5584.4714 |
Aromaticity | 0.2 |
Instability index | 71.7377777778 |
Isoelectric point | 4.14215087891 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0259419082949 |
Amino acid sequence | MMEFWFWELQIYPGFWILPLGEDLRNEFIFPCRNPMPEQQCLNCT |
Secondary structure | LLLHHHHHHHHLLLEEELLLLLLLLLLLLLLLLLLLLHHHLLLLL |
PRMN | - |
PiMo | - |