NONHSAT063047
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT063047 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4071 nt |
Genomic location |
chr19+:19463207..19468562 |
Exon number |
4 |
Exons |
19463207..19465012,19465164..19465254,19466073..19466200,19466517..19468562 |
Genome context |
|
Sequence |
000001 AAGCCTTTGC AGAGGCCAGC GAATGGGCCC TGCAGCTCAG GCCCTGGTGG GCCTTGGCCT CAGCACTGGG GATGCCACTA 000080
000081 CCCCGTCAAA ACCTGTAGCT GGCTCCTTCT AGAATGTGCT ATCACCCTGC CCTCAGCCTC TGAGCACAGT GAGGGCTGTA 000160 000161 TGTCCCCACT GGACAGTGCA AGTGGCCTGG GGGTGTGTCA GATGGGGAGG TTaaagtcac acagccccag accgcagaat 000240 000241 caggactgga acccagacct cactggctct gaTTTGTGTA GAAACCCCTG GAAGCTGCCT GGAGCAGGGC AAGGAGGGTT 000320 000321 GAGCAGCTGG TTCACTGCTG CTCCTGGCCC ATGTTTTAGG TGTTGTGGGG GCATCTTACA GAGCTCTTTT GGGAATCCCC 000400 000401 CTCTGCTCCc tgtgtccctg ggcccttgtc gggtgacaag cggcgcccaa gaactctcag accaaggtcc tggccttaag 000480 000481 tgactccaga tctcggggag acacagccag acacagccaa gccagtcctg tgaggtcagg ctggggacat ccagaaaggt 000560 000561 ggcagccttg ggggccgggA TAGTGTTGGT GCAGGCAGGG CAAGGTTGGC TAGGCAGGGG CTGCCACAGA GATGGGCACC 000640 000641 ACAGCAGTCA GAGCACAAGT GCCGGAGCAG ACGGCTGAAT GGCCACAATG GGCTCAGGTG AGGGTCCAGG GGCCCAGAAG 000720 000721 AGCTTGGGAT GCCCTGTCCT GAGCCTGTTA GGCTAGAGTG TCCACAAGAG CGGGACACCC CCCAGGATCA CTCAAGTCTT 000800 000801 CAAAACCAGA TTCTGTGGGG TACCCCAAGC TGGCATTGGG GGAACCTACC CAGGAGCGCT GAAGGAGGAC TCTCCTTCCC 000880 000881 CAGGCTGCTT TCAGACAGAG GTCCTTGGCT TTCTACAGGG AGCCCAGCCA GGCTCACAAT AAGCCAGGCC TAGCGGAAGA 000960 000961 GAGCAGTTTT TCTTGCTCTG AGGTTTCAAA AGGGCTTGGT GAATTTTAAA AAGCTCCAAG ACCCACCTGG AGCTCACTTT 001040 001041 CAAGGTGCAG CTACAGGGCA GTGTAGAGTT GTTGGGCTTT GTGTCTCAGG AGGAGCATCT CTGCACTCTG GAGAAGTATC 001120 001121 TGGTGGCGTC AAAGCCAGGT CTCAGGAGTT GGTTTTGGGG ATGTGTCCAT CTTGGCTTCC CAAGTGCTCC CTGGGCTGCC 001200 001201 AGGAGCCATC ATCTAGGGAA TTTTCCAGGT CTTACCTGAA CCCCACATCC AGGCTTACAG GGCTTTGAGT CCTCGGTCCA 001280 001281 GACAGGGTCA GTCCAGCACT GCTGGTCGCC TGTGTAGCAC AGGCTCCTGT CTGCCGTCTC CAGGCCCTTG CCATAGCAAC 001360 001361 AGGGATGGGC ATTTATGGGC CCTGATGGCT CTTACTGAGC TCTTCCTGCC ACATCCTGAG GATGCTAGGG CTGCAACTGG 001440 001441 GGTGGCCCTG TGCAGTCACA AAGCAGGGAG TCCGGATTGG AGGATTCTTA CATGCTGGTG CCCCCAGAGC CCCTGCGTGT 001520 001521 CTGCGGGGGC CTCCCATGAG AGCCAACTCA ATTGTGGAAG ACAAACCGGA GGGGCTGCTG CCCTTCTCAG AACCTGAAAC 001600 001601 CTGGAACCCT ATATGAATCT GCATTTCTGA TCAGCCCCCA TTGTGGGTCT AGGGCTAACG GCCATCAGTG CTTTTTCTCT 001680 001681 GCTTGAACAG GTAGAAGCCC CCAAAGTTGT CCATTGGCCA TGCCCCTGTG AGGGCATGAG CCAGAAGTGA GGGCAGTTTG 001760 001761 TTTTTCAGTG ATACTTCaga gagggccatt tgagatgggc tctgagGAGA GTAACAACAT GGTGGTGCCT GCCATGCAGC 001840 001841 TCGCCAGCAA GATCCCGGAC ATGTCGGTAC AGCTGTGGTC GTCAGCACTG CTGAGAGACC TGAATAAAGC CTGTGGGAAC 001920 001921 GCCATGGATG CCCATGAAGC CGCCCAGATG CACCAGAACT TCTCGCAGCA GCTGCTCCAG GACCACATTG AGGCCTGCAG 002000 002001 CCTCCCCGAA CACAACCTCA TCACGTGGAC AGACGGTCCA CCCCCCGTGC AGTTCCAAGC TCAGAATGGA CCCAACACCA 002080 002081 GCCTGGCCAG CCTCCTGTGA GGCCTTGATG GGGCCATCCA GCTCCGCAGG GCCTGCGCGT CTCCGGCTTC CACCCAGACG 002160 002161 GCACTCAAGC CTGCCCCCGA GGCGTGCTTC CTTCCTGATT GTCTCTAGAG CTTCCAAGTC CTGGGAATGT GCGGGGCCAG 002240 002241 TCCCTGCCCT CCCAGGAGGG GTGGTAGCCG TTCCCACCTC GCAGCAGGAC CCCCAGTGCA GAGGCTCACA GGTGGCACAC 002320 002321 AGGCGCTGTC TCTCCAGAGC CATCCTTCAG AGTGGACCTC AGTGCCAGTC CTGCCTCAGC ATCTGGGTCA CGTCGGCCAG 002400 002401 GAGTAGGGTG CAGGCCTCCA GCAGGTCCTA ATCCTGTGTG CCAGGGCAGG CAGTGCCCCA GGGGCACCAC GCCTGACTCT 002480 002481 CCATCACCCA GGCCTTGATG CCGAGCGGGA GTAGAGTGTT TCCTCTGCTC AAGGCAATTT CCAGAGCCCG GATGCCAGTT 002560 002561 TCTGGCCTGA ATTTGGAGGG AAGAAGTAAT GGCGCTAGTG TGGGACGAAG CACAGATCCC AGCACTTTTC CCAGCTTTCT 002640 002641 CTCCAGCATC AGTCCCTGCA GCAGCTGGGG CCTCTGGTCA GGAACCCTCA GGGACCCAGG AACTCAGCTT CCAAACATCT 002720 002721 GCACCTTGAC CGGACTCGCC ATCCCGCCGT GGGGGTGCAG GTGATTGTAA ACACGGGTGT GCATGTGGAT GCACACGGGT 002800 002801 GTGCGGTGAA GATCTGTGGA GATGGAGCTG GGAGCTGAGG CTCCTGTTGC ACCAGCCACC TTCCCCCATC TTGTGGCTGC 002880 002881 TGAGGGGCAG GAAGCGGGGG AGTGGGCTCG TCTCCTAAAT TTAAGATCAC CTCCTCAGCT AGCTTAGAGT GCGTGGCACG 002960 002961 GGCCCCCCGC CCCCGAGATC TGGAGCCCAG GGACTTTCTT CCTGGCAGAT CTGTGGCCTT CCCTGCTCAG CCTCTTGGTC 003040 003041 CCCCCACTCC CTCCACCGCC TCACCTTCCC TGCTGGGTCT CTGGGGCACA GTGTGAAACC CGCACCCTAG CCAGGCCCCA 003120 003121 GGGAGCCTCC GCTGGGCCCA GACAGCAGCG TTTGGTTTTA TCCACTTTTC TTGGATAATC AGGAGGTGCC CCAGTGGTCA 003200 003201 CAGTGTGGCA TTCCGAGTTG GGGCGGGTGG TCGGGTCAAG ATAGCAGCAG CAGGTGTCAG GGCTCAAGAC ACCACCCCCT 003280 003281 CCAGCTTCTG GGGCCCAGGA GCCTCTCCCT GCTACAGGGG GTGGGGGTCC TGCTCAGCAG GGTAGGTGGT GGTTTTAGGT 003360 003361 CTTGTCACCC TCACTCAGTG GAACTGCCTC TGGGAGCTTT GGCGTCTGTG ACTAAAGGGA CGCTGGATTG CTCAGGTCAG 003440 003441 CTGCTTGGGG CTCCCAGGCT GGGTGTGCCT TAGCCACAGG CAGGGCTGTC AATAACCCCC TTCCTCACTG GCCACCACCT 003520 003521 GACATCAGCA CCAGTGACAG GCTGGTCAGA GGGCGGGGCT GGTGAGGGTT TGTCCTAAGA GGACCACCGC CATCTCTGGG 003600 003601 TCTCCAGGGG GAGAGCCTGG CCCTGTCCTT TGCTACCCAG GGCTGCCCCC AGGCCCATGA AGCCAATAGG AGAGCGTGTG 003680 003681 GCACTGGCCC ACAAACTGTC CCTGTCCTGT CTTCCTCCCG AGCCATGGCC TCTGCTAGCT CCACCTTGAA GGAGCCCCCC 003760 003761 ACATCCTCCC CTACATCCCA GAGATGCCAC CACTTGTGTC TCCACAATGT GCTCCTGCCC ACCCGGGTTC CGCACTGTCC 003840 003841 GACCCCTGCA CACCACTCAT GTCACCACGG CGTGCATCAT GTTCATCCCC ATCTATTTAT TTAAGCCTTT CTTTGCTTGT 003920 003921 AGGGCATTTT GTATGTAGAG CAGTTGAAAA CAGAACCTCA GAACTTAACA TCTGTCCTGA TGTTAAAGTG CTTTTCATGA 004000 004001 CCACCCTGTT ATCTATGTAT ATGTAAAGTT AAGGATGAGA TCTTAAGTTT ACAATTAAAA ACTCAGTACT C |
Predicted Small Protein
Name | NONHSAT063047_smProtein_728:952 |
Length | 75 |
Molecular weight | 8248.1421 |
Aromaticity | 0.0675675675676 |
Instability index | 73.85 |
Isoelectric point | 6.01824951172 |
Runs | 9 |
Runs residual | 0.0210283454186 |
Runs probability | 0.0210013935505 |
Amino acid sequence | MPCPEPVRLECPQERDTPQDHSSLQNQILWGTPSWHWGNLPRSAEGGLSFPRLLSDRGPW LSTGSPARLTISQA |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLHHHHLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLE ELLLLLLEEEEELL |
PRMN | - |
PiMo | - |