NONHSAT066006
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066006 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3032 nt |
Genomic location |
chr19+:36981710..36984741 |
Exon number |
1 |
Exons |
36981710..36984741 |
Genome context |
|
Sequence |
000001 tgatctcggc tcgctacaac ctcctcccag ccgcctgctt tggcccccca aagagccgag attgcagcct ctgccccgcc 000080
000081 gccaccccat ctgggaagtg aggagcttct ctgcctggcc gcccatcgtc tgggatgtga ggagcccctc tgcctggctg 000160 000161 cccagtctgg aaagtgagga gcgtctctgc caggccgccc atcgtctggg atgtggggag cgcctctgcc ccgccgcccc 000240 000241 gtctgggatg tgaggaacgc ctctgcctgg ccgcgacccc gtctgggagg tgaggagcgt ctctgcccgg ccgccccgtc 000320 000321 tgagaagtga gaccctctgc ctggcaaccg ccccgtctga gaagtgagga gcccctccgc ccggcagccg ccccgtctga 000400 000401 gaagtgagga gcccctccgt ccggcagcca ccccgtctgg gaagtgagga gcgtctccgc ccggcagcca ccccatccgg 000480 000481 gagggaggtg ggggtcaccc ccgccaggcc agccgccccg tccgggaggg aggtgggggg gtcagccccc cgcccggcca 000560 000561 gccgccccgt tcgggaggga ggtggggggg tcagtccccc gcccggccag ccgccccgtc cgggaggcga ggggcgcctc 000640 000641 tgcctggcca cccctactgg gaattgagga gcccctctgc ccggccagcc gccccgtccg ggagggaggt gggggggggt 000720 000721 cagccccccg cccggccagc ctctccgtcc gggaggtgag gggcgcctct gcccggccgc ccctactggg aagtgaggag 000800 000801 cccctctgcc tggccacgac cccatctggg aggtgtaccc aacagctcat tgagaacggg ccatgatgac aatggcggtg 000880 000881 ttgtggaata gaaaggcggg aaaggtgggg aaaagattga gaaatcggat ggttgccgtg tctgtgtaga aagacgtaga 000960 000961 tatgggagtc ttttcatttt gttctgtact aagaaaaatt cttctgcctt gggatcctgt tgatctgtga ccttaccccc 001040 001041 aaccctgtgc tctctgaaac atgtgctgtg tccactcagg gttaaatgga ttaagggcgg tgcaagatgt gctttgttaa 001120 001121 acagatgctt gaaggcagca tgctcgttaa gagtcatcac cactccctaa tcttaagtac ccagggacac aaacactgcc 001200 001201 gaaggccgca gggtcctctg cctaggaaaa ccagagacct ttgttcactt gtttatctgc tgacattccc tccactatcg 001280 001281 tcctatgacc ctgccaaatc cccctctgca agaaacaccc aagaatgatc aattaaaaaa aaataaataa aTAAATAATA 001360 001361 AGGATATATT CTggccgggt gcggtggttc acgcctgaaa tcccagcact ttgggaggct gaggggtttg agaccagcct 001440 001441 gggcaacatg gtgtaaaccc cgtctatact aaaaatgcaa aaattagccg ggcatggtgg tgcgcgcctg tagtcccagc 001520 001521 tactcgggag gctgaggcag gagaatcgct tgaacccagg aggcagaggt tgcagtgagc caagattgca ccactgcact 001600 001601 ccagcctggg cgacagagtg agactcggtc tcaaaaaaaa aaaggataca ttctgagaaa tgcattgttg ggcaatttca 001680 001681 tcattatgga gtgtactgac acaaacctag atggtatagc tgactgaaca cttaggctac atggtataac ctgttgctcc 001760 001761 taaactacaa agctatacag tatgttactg tactgaatac agttggaaca ctgtagggac cagccctaca aggtctgtgg 001840 001841 gtttttctcc ctgtgtgcag agactagagg tggtagaaat aaagacacaa gacaaagaga taaaagacac ctgggcccgg 001920 001921 gtgagccact accaccaaga cacagagact gatagtggcc ccgaatgcca ggctgcactg ttatttattg gatacaagac 002000 002001 aaggggggca gggtaaggag tgtgagccat ctccaatgat aggtaaggtc acgtgggtca cgtgtccact ggacaggggg 002080 002081 cccttccctg tttggcagct gaagcggaga gagagagaag acagcttacg cattatttct gcatatcaga gacttttagt 002160 002161 actttcacta attttgttac tgctatctag aaggcagggc caggtgtaca ggatggaaca tgaaagcgga ccagtagtgt 002240 002241 gaccactgaa gcacagcatc acaggaagac ggttagacct ccagataact gcgggcgggc ctgactcatg tcaggccctc 002320 002321 cacaagacat ggtggagtag agtcttctct aaactccccc ggggaaaggg agactccctt tgctggtctg ctaagtagtg 002400 002401 ggtgcttttc cttggcactg acgctactgc tagaccacaa tccgcttggt aacaggcgtc ttcccagacg ctaacgttcc 002480 002481 gctagaccaa ggagccctct ggtggccctg tccgggcata acagaggctc acacacttgt cttctggtca cttctcacca 002560 002561 tgtcccttca gctcatacct ctgtatggcc tggtttttcc taggttatga ttgtagagtg aagattatta taatatttga 002640 002641 ataaagagta attactacaa actaatgatt agtgatactt gtgtataatc atatctgtga tctgtatcta gtgtaattct 002720 002721 tgttatttta tatattttat tatactgaaa cagcccatgc cctcggtctc ttgcctcggc acctgggtgg cttgctgccc 002800 002801 acagaacaca atggtaagta tttatgtatc taaacatatc taaacacaca aaaggtacag taaaaaaaac agcatgaaaa 002880 002881 gtaaaaaatg gtacacttgt atagggtact taccaagaat ggaggctgca ggactggaag ttgctctgga gagtcgatga 002960 002961 gaggtgagtg aatgtgaagg ctaggacatt acagtacaac actctagact ttataaacat tgtacactta ag |
Predicted Small Protein
Name | NONHSAT066006_smProtein_1106:1327 |
Length | 74 |
Molecular weight | 8287.5887 |
Aromaticity | 0.0547945205479 |
Instability index | 57.1356164384 |
Isoelectric point | 9.73028564453 |
Runs | 10 |
Runs residual | 0.00715863897481 |
Runs probability | 0.0244921391981 |
Amino acid sequence | MCFVKQMLEGSMLVKSHHHSLILSTQGHKHCRRPQGPLPRKTRDLCSLVYLLTFPPLSSY DPAKSPSARNTQE |
Secondary structure | LLLHHHHHHLLLEEELLLLEEEEELLLLLLLLLLLLLLLLLLLLHHHEEEEEELLLLLLL LLLLLLLLLLLLL |
PRMN | - |
PiMo | - |