NONHSAT066604
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066604 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2577 nt |
Genomic location |
chr19+:44084790..44088116 |
Exon number |
3 |
Exons |
44084790..44084821,44085364..44085516,44085715..44088116 |
Genome context |
|
Sequence |
000001 GGGGTGGAAG GGACCACATC CAGCAGGCTG AGAGGGCAAG GAGTTGGTGC ACACCTACAA GGGCTGCATC AGGTCCCAGG 000080
000081 ACTGCTACTC CGGCGTTATA TCCACCACCA TGGGCCCCAA GGACCACATG GTAACCAGCT CCTTCTGCTG CCAGAGCGAC 000160 000161 GGCTGCAACA GTGCCTTTTT GTCTGTTCCC TTGACCAATC TTACTGAGAA TGGCCTGATG TGCCCCGCCT GCACTGCGAG 000240 000241 CTTCAGGGAC AAATGCATGG GGCCCATGAC CCACTGTACT GGAAAGGAAA ACCACTGCGT CTCCTTATCT GGACACGTGC 000320 000321 AGGCTGGTGA GTGGTGCCTG AATCTCTGGA AAAGGAAACA GAACTAGAGG TCCAAACTTC TAGGTTCGAT GGGAGGAGAG 000400 000401 GGTTCCAGAG AAGTGGGTGA GGATGTGTTC TGGGATTATG AGGAAGAAGG GGCTGAGGTC CCTGATTCCA GTCTGAAATC 000480 000481 TCCCTTTCAG GTATTTTCAA ACCCAGATTT GCTATGCGGG GCTGTGCTAC AGAGAGTATG TGCTTTACCA AGCCTGGTGC 000560 000561 TGAAGTACCC ACAGGCACCA ATGTCCTCTT CCTCCATCAT ATAGAGTGCA CTCACTCCCC CTGAAAAGCT ATCTGAACAG 000640 000641 AGGAAGATAA TGTAGTGTGA AGTCCCCATT TGTCCTCAGC CTGTAACTCC CCGTGTGCCT ATAAAGAAGT TAATAGAGCA 000720 000721 AGCCTGAGTC CTTGTGGTGT GATGTATCTT GATGAGATAG AATGCAGGAA ATAGGGGGTC TCAATCCTCA TTTCAAATCC 000800 000801 CCTCCTTTTG AGGAAGAGAG GGAAGGCCCT GCCTTCTTTC TTTCTTTCTT TTTCAGACAG GGTCTCACTC TGCCACCCAG 000880 000881 GCTGAAGTGC AGTGGTGCAT TCAAGGCTCA CTGCAGCCTC GACCTCCCGG GCTCAGGTGA TTCTCTCACG TCAGCCTCCC 000960 000961 TAGTAGCTGG CACTACAGGC ATGCACCACC ATGCTCGGTG ATTCTCCCAC CTCGGCCTCC CTAGTAGCTG GGACTACAAG 001040 001041 CGTGCACCAC CATGACTGGC TAATTTTTTA ATTTTTTTGT AGCAACAGGG TTTCACCACA TTGCCCAGGC TGGTCTTGAA 001120 001121 CTCCTGGGCT CAAGCGATCC TTGGCCTCCC AAAGTGCTGG GATGACAGGT GTGAGCTACC ATGCCTGGTG GCCCTGCCTT 001200 001201 TTATGAAGGG ATTAGTCTTT GCCAGGTCCC TGTGCTGTGT TTTCCATGCT ATACCTCATT TCATGATCAT AACAACTGTG 001280 001281 AGGTTGATAT TATTATCCCC ACTCTACAGA TGAACAAACT GAGGCATAGA TTGTGGGTGT CAAAATTTGC CTTGGGTCAA 001360 001361 ACAACCAGGG AGGGTCAGAA CCTTGATTTG AACCCGAGTC TGGTATACTT CAGAGTCCAT GATCATCTCT CTCAATTAAC 001440 001441 TGCTTCCTCT TTTTGCCTCA GTGTTCATGT CTGCAAAATG TAGATATTAA TAGTTATAAC CTCATAAGGT TGTTGTAAGA 001520 001521 GTCAAATGAA AGACAACTTA AAAAGCGCTT AGTGCAATGC CTAGCACCAC ATGTGGATTC TAAAGACAAT GTATGCCTGA 001600 001601 GTAAACAGTA ATCATCATAA TAGCTGCCAC TTACTGAGTG GCCATTAGTT GACAGGTGCT AAACACTGAC ATCAATTGGG 001680 001681 ACAGACTAGA TGTTACAGTA ACAAAACAAG TCCCTGATCT CAGTGGTTTA AAACAACAAA GTTGTATTAA CTAACACTGT 001760 001761 AATAATGCTA TGTAACAAAT CATCCTAAAA CTGAGACTTC TTTTTTTTTT TTTTTTTTTT GAGACAGAGT CTTACTCTGT 001840 001841 CTCCCAGGCT GGAGTGCAGT GAAACCATCA CAGTTCACTG CAGCCTCAAC CTCATGGGCT GAATCGATCC TCCCCGCTCA 001920 001921 GCCTCCCTGG TAGCTGGGAC TACAGGCATG CGCCACCATG CCCAGCTATT TCCTGTAATT TTTTTGTAGA GACAGGGTTT 002000 002001 CCCCATGTTA CCCAGGCTGG TCTCAAACTC CTGGGTTCAA GTGATCCACC CACCTCGGCC TCCCAACATG AAAACTGAGA 002080 002081 CTTATACCAA CAAGCATTCT TCTAAGGGTT TGTGGGATGG CTGCTTTGGC TCCAGTTCGG GAGGATTCAG GTCTCTTCCA 002160 002161 TGAGATTCCA CAATTTTCTG GGATCAGCAG CTCCCTCGCA AATGTTCTCA TGGCACATCA CGGGAGCACA AAAGCCAAGT 002240 002241 GCACTTAAGG GCCTTGCTAA GGTTAGGTCT GCTAAAATTC CATTAAGTAA ATCATATGGT GAAACCCATC AGTGGAGCAG 002320 002321 GGAAATATAC TCCCCCTCCA GTAGAAGGGA GAGGAGTGGA TATTTGCTGA ATGACTGCCC ATTCACAAAA GGTAAACTTT 002400 002401 TCCTTCACCC TAGCACTATC CAGAGGGTGT TTTCCTCGTC ATAGTCATAA ATCAGCCACC GGCAGGGCAC GATGGCTCAC 002480 002481 GCCTGTCATT CCAGCACTTT GGGAAGCCGA GGCAGGAGGA CCACTTGAGC CCAGGAATTT GAGACCAGTC TGGGCAACAT 002560 002561 GGCAAAACCC TGTCTCT |
Predicted Small Protein
Name | NONHSAT066604_smProtein_2159:2443 |
Length | 95 |
Molecular weight | 10616.019 |
Aromaticity | 0.117021276596 |
Instability index | 53.8553191489 |
Isoelectric point | 10.5470581055 |
Runs | 15 |
Runs residual | 0.0307585568918 |
Runs probability | 0.048401342519 |
Amino acid sequence | MRFHNFLGSAAPSQMFSWHITGAQKPSALKGLAKVRSAKIPLSKSYGETHQWSREIYSPS SRRERSGYLLNDCPFTKGKLFLHPSTIQRVFSSS |
Secondary structure | LLLLLLLLLLLHHHHHHHHLLLLLLHHHHHLHHHLLLLLLLLLLLLLLLLLEEEEEELLL LLLLLLLEEELLLLLLLLLEEELLLLEEEEEELL |
PRMN | - |
PiMo | - |