NONHSAT068048
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068048 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6270 nt |
Genomic location |
chr19+:56074303..56080572 |
Exon number |
1 |
Exons |
56074303..56080572 |
Genome context |
|
Sequence |
000001 cagctgattt ggaatcttat ttattattat tattatttta gagatggcag ggtctcactt tgttgcctag gctggtctca 000080
000081 aactctaggc tcaagcgatc ctcttgtctc agcctcccaa agcgctggga ttccaggcct gagccaccgc tccccgcctg 000160 000161 aacttggaac attaattcta cctggggtaa atctgcacct agagcagcgt ctgactgaag ggctgggagc ggggatgtga 000240 000241 gcacccgggg aacaggggtc ttgaggaccc tcttagaatt gtgcccacAG CAGGGACTGA TAGAGAGAGA GATGGTTGTG 000320 000321 GGAGGGGTAG GGAAGGTCGT GGGGGTGTAT GTAAAGGGAG GCCTGAAACC AAGGGTGGGA GGTCATTCCA GGCAAAGAGA 000400 000401 GTTGTCCGTG AGAGGCCGCA GAGGAGAGCG CGTGGCCTGT GCTAGGAACC GACAGAGTGC TGGAGATTAA AGGAGTGAAT 000480 000481 GATGTGTGTG GAGTGGCTGG CACTGGTGAG CGGGTGAGGT AATAAATAGC AGCAGGGTTA TTATCCCACT GTCAGAAGGC 000560 000561 TGGAGGCTGC CCAACCGCTT CACTCCCGCG CTCCGGGTCT GTCTGCCCAG GGCTTtctct ccctctctct ctgtctctgt 000640 000641 ctctccctct ctatctcctc tgtctttctg tctctcttcc catctctctg tctctccctc cctttctctc cctctctcgc 000720 000721 actgtctctc tgtgtgtctc ttcctctctc tctctccctc tctgccccct ctgtctcccc ctctctgccc cctctctccc 000800 000801 ccctttactg ccccctctct ctcttcctct ctgccccctc tgtctcccct tctctgcccc ctctgcctcc ccctcACTGc 000880 000881 tccctctgtc tctccctctc tgccccttct ctctcccccc tctaccccct ctctctcccc ctctctgccc cctttctctc 000960 000961 tccgtctctg ccccctctct ctctccctct ctgcccctct gtctctccct ctctgacccc tctgtctctc tctctctgcc 001040 001041 cctctgtctc tccctctctg tcccctctgt cTCTCGTGAT CTGCCCTCTG ACCTCACGAT CCCCCTGACC TCGGGATCTC 001120 001121 TCGTGATCCC CCTCTGACct ctctgccctt ctgtctctct ctctctgccc ctctgtctct ctctgtctgc cccctctgtc 001200 001201 tctccctctc tgcccctctg tctctccctg tctgcccctc tgtctctctc cctcCCACTG TGTGTGACTT TGGGTGGGTC 001280 001281 CCTCTCCTCT CCCTGGTTCC TCATCTGCTT CCAAGACTGC CCCCTCCCTC CCTGAGCCCA AAGAGCCGAT GCCTGGGGAG 001360 001361 GGCCCAGCCT GGACTAAGGC CCAGCGGCGG GAGGAGCCTG GGTTGGAGGC CGGGAGCAGT GGGGCGAACG GCAGCAAATA 001440 001441 TTTATGGAGC CAGGTCTGTG CCAGGCTCAG GGCTGGGTGT GGCGAGATAA GGGGGCCAGG GGAGGCGCCC GGACTTGGCC 001520 001521 TCCAACCCGC TTGCCCCAGG GAGGCCGGGA GCCGGGCAGG GGGAGGTGCC CGGGAAGGAG GGCTGGGCGC TGGGGTCGTG 001600 001601 CAGGCAGGGG TCCCCGTGGA GCCTCGGGCC CCTCTGGAGA GTGGTTCACA CTTCATAGGT CAGCTCCAGC CTGGTTGGTA 001680 001681 TGAAGCCTTC TCCCACGAAG AAGCCCCGAG CACTCTCGCT GCGGTGGCAC CTCCCGGCTG TCCCCGGCTT CCCCTTGGGC 001760 001761 ACCAGTCTGT GTTTTGTTAA TAGCACCTGA GGTGGAAACA GATGGGCTTc aaggaagcaa gtcacatgga attggacccg 001840 001841 aatgcagatt atcaaataag tatctgtgtg tctacactga tacaaagaaa tACGAGGATG Aggccgggag tgttggctca 001920 001921 cgcctgtaat cccagcactt tgagaggccg aggcgggagc atcacctgag gtcaggagtt ccagaccagc ctggccaaca 002000 002001 tagtgagatc cctgtctcta ctaaaagtac aaaaattagc cgggcgtggt gttgcgcgcc tgtaatccca gctactcggg 002080 002081 aagctgaggc aagagaatca cttgaatcca ggaggcggag gttgcaatga gccgagatcg caccactgca ctccaacctg 002160 002161 ggcgacagag cgagacttga aagaacgaaa gaaagaagga agggaggaaa gaaggaagga aggaagggag ggagggggaa 002240 002241 agggaaagaa agaaagaGGC AGATGAGCGA GTTAGCAGGA AAAGGTGAAG GAACACATCT CTCTTACAGA ATAAAAtttt 002320 002321 tttttttgag acagagtcct gctctatccc ccaggctgga gtgcagtggc acgatcactg caaccactgc ctcctgggtt 002400 002401 caagcaattc tcctgccgca gcctcccgag tagctgggat aacaggtacg cgccaatgtg cccagctaat Gttttttttt 002480 002481 ttttttgaca cagagtctca ctctgttgcc caggctggag tgcggtggcg cgatctcggc tcactgcaag ctccgcctcc 002560 002561 agggttcaag tgattctcct gcctcagcct ccccagtagc tgggactaca ggtgcccgcc accacacctg ggtaattgtt 002640 002641 tatattttta gtagagacag gatttcaccg tgtcagccag gatggtctca gtctcctgac ctcgtgatcc acccgccttg 002720 002721 gcctccgaca gtgctgggat tacaggcgtg agccaccgcg cccggcTGTA TTCTTAAGAA CTGTCTATCt actcccccat 002800 002801 tctgaagaag ggagcttaat tcccccacag cccaaatgcc ccgtgggctg cactcggcgg cttgtttaca aagactagat 002880 002881 gaatggaaag gaaggggggt cacatacagt ggggagagct ggcaaacacc acccctgcca ggtgaccagg gtggtcaagc 002960 002961 atgggtgagc agacatgaga acacgcacct cctgatagga ggcgaagaga agggATTTTT TTTTTCATAC TAAAAAAATT 003040 003041 TTTTTggctg ggcgtggtgg ctcatgcctg taatcccagc actttgggag gccaaggtgg gtggatcacc tgaggtcaag 003120 003121 agttcaagac caacctggtc aacatggtga aaccccatct ctactaaaga ttaaaaaatt agctgggcat ggtggcgcac 003200 003201 gcctgtaatc ccagctactt gggaggctga ggcaggggaa tcgcttgaac ctggaaggcg gaggtcgtag tgagctgaga 003280 003281 tcatgctact gtactgcagc ctggacaaca agagtaaaac tccatctcaa tttaaaaaaa atgttttttg aagagaaagg 003360 003361 gtctcactgg gttgcccaga atggttctct aactcctggg ttcaagcgat cctccctcct cagcttacca gatagctgga 003440 003441 actataggtg tatgccacca ggcctggcta atttttaatt tttaattttt ttttagaggt ggtgtcttgc tatgttgccc 003520 003521 aggctggtct caaactcctg gcctcaagca atccacccac ctcagcctcc caaagtgctg ggattacagg tgtgagccac 003600 003601 cttgcttggc cCAGAGGGGC ATTTTGTGTG TGTAActgtc gtcctagcta cacgggaggc tgaggcagga gaaccacttg 003680 003681 agcccagggg ttggaggtta cagtgagcca ggatcacacc actgcactcc tgcctgggca acagagcgag actccatctc 003760 003761 aaaaaaaaga GGTTTTTTtt tttttgcgtt tttgttattt attgattgat ttatgtatta gttcatcagc tgttagtgta 003840 003841 ttttatgtgt gacctgagat aattcttcca atgtgggcca gggaagccac aagattggac acccctgCCC TGCaggcttc 003920 003921 agaggcagtg tggccctgcc gacaccttga ccccagactt gcagccccag atccctggga cagcacactt ccgtGCTCTG 004000 004001 CTTTGccagg actgctctaa actgtcaaag tcatcagaac gaggcaagtc tgagaaacag tggcagacag taagagatta 004080 004081 aggaggcatg acggtgagac gccatgtggt atcctgggtg ggatcctgaa tggaaaaagg tcgttcgtga catctgagta 004160 004161 aagggcagag ttttgtgctg tactagtgtt tgcttcttgg ttttgacaga cgtgccatgg taatgggaga cgagaacatt 004240 004241 tggggaaatt gggtgagggg tctgtagcaa gtctactatc actcactgca gctctactat cccgtcttaa atgtttctaa 004320 004321 acaaaaaagt ttatgtaaga aAGAAAACCA GGTGGGCTTA TGGGTACTTT TGCCACACTC CCCACCAGGC TATTCACACA 004400 004401 GAAGCCAGGG AGAATCTGTC ATACCAGGAG AGGggagttt gtgttattca ggtgtatgtc tttgtccaaa tgtatcaaat 004480 004481 ggtaacttgg gaaatgtggc atttcactgt attttaattt tactaatgac aagaagctta aatatttgat atcttgttat 004560 004561 gttatgcatg ctaaTAAAAC ATCAAACAAA AAAGAAAAAG TTTTTTAAAA ACCAAAAAAA aatgttatgc atgctgaagt 004640 004641 gtttaggagt gaactgatat gttgctttga gaattgcaag ttgcatagag aaagatgaat atatgagaac tctctgtgct 004720 004721 ttctgttcaa ttttgctatg aacctacaac ttctctaaaa aataaaatgt attaatttta taaagatgga tgatggatga 004800 004801 atcaatgatg gatagatgga tggatgatgc atgaatggat aggtgaatgg atggatggat gatggatgga tgaatggatg 004880 004881 gttggatgaa tgggtgaatg gatggatgga tgatggatgg atgaatggat gaatgggtga atcaattgat gaatgaatag 004960 004961 atggatggat gggcagatgg gcagatggat aaatgaatga atgaatggat gggtgaatgg atagatggat aggtgaatgg 005040 005041 atgatggatg aatgaataga taatggatga tggatgaatg ggtggatgga tggatggatg gatggatgga tggatggatg 005120 005121 gatgaatggg tggctaaatg gatagatgca tagatggatg gatgatggat ggataggtga atggatggtg gatgaatggg 005200 005201 tggatgggtg aatgaatgga tggatggttg ggtaaatggt tggatgagtg agtagataga tggatggatg atggatgagt 005280 005281 gaatggataa atagatgggt aaatgatgga tggatgggtg gatgaataga tgaatagatg gatggattat ggatggatgt 005360 005361 atagatggat ggctgatgga taaatgggtg aatggatgaa tggataatgg atggatggat gggtgtatgg aaggatggat 005440 005441 ggatgtggga atggatgggt tcatggatgg atggatgAAT GTAGAGAATG GGTACATAGA CATTCGCTGC ACAATTATTT 005520 005521 TTATTTCCTT ATGTTTTTAT ATTTTTATAA TGACACGCTA AAAGGAaaaa ggaacgtcga atcctgtcag cctctgcatg 005600 005601 aattcctcca agatttccat ctcattttga tcagaaattg ggttctcatg actctctacc caatctggta ccccatcacc 005680 005681 tccttgatct cctctcccat tgctccctcc tttgctcact cctctccagc cacattggcc cctctgctcc ttgaacactc 005760 005761 cagctatgtc ccctcctcag aacttttgca tcagatgtgc ccttcctctg ggacacatcc cagttatctg cactgctctc 005840 005841 tcgttcagct cttggcctac acaactgaag ttcctacatg ccctgtcttg cattgtcttt ctccatagca tttctctttc 005920 005921 tctaagacgt tttataattt actttcttgc tatgttttct tgcctgactt ccctcactag aatggaagcc ccacctaaag 006000 006001 agggattcat ctattttgtt aaccaatgaa taagctgcac cttggacagt gcctggcaca tagtagaggc tcagtaatga 006080 006081 gttttaggat gagtgaatGG AAGACTGAAT GAggccgggc gcagtggctc acgcctttaa tcccagcact tttggaggct 006160 006161 gaggcggaca gatcacctga ggtcaggagt tcgagaacag cctggccaac atggtgaaac ctcatctcta ctaaaaataa 006240 006241 aaaaattagc cgggagtggt ggcacatgcc |
Predicted Small Protein
Name | NONHSAT068048_smProtein_5765:6028 |
Length | 88 |
Molecular weight | 9912.7965 |
Aromaticity | 0.137931034483 |
Instability index | 57.0425287356 |
Isoelectric point | 9.03924560547 |
Runs | 11 |
Runs residual | 0.0118226600985 |
Runs probability | 0.0533876122112 |
Amino acid sequence | MSPPQNFCIRCALPLGHIPVICTALSFSSWPTQLKFLHALSCIVFLHSISLSLRRFIIYF LAMFSCLTSLTRMEAPPKEGFIYFVNQ |
Secondary structure | LLLLLLEEEELLLLLLLLLEEEEELLLLLLHHHHHHHHHHHHHHHHHHHLHHHHHHHHHH HHHHHHHHLLLLLLLLLLLLEEEEELL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTTTTTTTT TTToooooooooooooooooooooooo |