NONHSAT068048

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT068048

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6270 nt

Genomic location

chr19+:56074303..56080572

Exon number

1

Exons

56074303..56080572

Genome context

Sequence
000001 cagctgattt ggaatcttat ttattattat tattatttta gagatggcag ggtctcactt tgttgcctag gctggtctca 000080
000081 aactctaggc tcaagcgatc ctcttgtctc agcctcccaa agcgctggga ttccaggcct gagccaccgc tccccgcctg 000160
000161 aacttggaac attaattcta cctggggtaa atctgcacct agagcagcgt ctgactgaag ggctgggagc ggggatgtga 000240
000241 gcacccgggg aacaggggtc ttgaggaccc tcttagaatt gtgcccacAG CAGGGACTGA TAGAGAGAGA GATGGTTGTG 000320
000321 GGAGGGGTAG GGAAGGTCGT GGGGGTGTAT GTAAAGGGAG GCCTGAAACC AAGGGTGGGA GGTCATTCCA GGCAAAGAGA 000400
000401 GTTGTCCGTG AGAGGCCGCA GAGGAGAGCG CGTGGCCTGT GCTAGGAACC GACAGAGTGC TGGAGATTAA AGGAGTGAAT 000480
000481 GATGTGTGTG GAGTGGCTGG CACTGGTGAG CGGGTGAGGT AATAAATAGC AGCAGGGTTA TTATCCCACT GTCAGAAGGC 000560
000561 TGGAGGCTGC CCAACCGCTT CACTCCCGCG CTCCGGGTCT GTCTGCCCAG GGCTTtctct ccctctctct ctgtctctgt 000640
000641 ctctccctct ctatctcctc tgtctttctg tctctcttcc catctctctg tctctccctc cctttctctc cctctctcgc 000720
000721 actgtctctc tgtgtgtctc ttcctctctc tctctccctc tctgccccct ctgtctcccc ctctctgccc cctctctccc 000800
000801 ccctttactg ccccctctct ctcttcctct ctgccccctc tgtctcccct tctctgcccc ctctgcctcc ccctcACTGc 000880
000881 tccctctgtc tctccctctc tgccccttct ctctcccccc tctaccccct ctctctcccc ctctctgccc cctttctctc 000960
000961 tccgtctctg ccccctctct ctctccctct ctgcccctct gtctctccct ctctgacccc tctgtctctc tctctctgcc 001040
001041 cctctgtctc tccctctctg tcccctctgt cTCTCGTGAT CTGCCCTCTG ACCTCACGAT CCCCCTGACC TCGGGATCTC 001120
001121 TCGTGATCCC CCTCTGACct ctctgccctt ctgtctctct ctctctgccc ctctgtctct ctctgtctgc cccctctgtc 001200
001201 tctccctctc tgcccctctg tctctccctg tctgcccctc tgtctctctc cctcCCACTG TGTGTGACTT TGGGTGGGTC 001280
001281 CCTCTCCTCT CCCTGGTTCC TCATCTGCTT CCAAGACTGC CCCCTCCCTC CCTGAGCCCA AAGAGCCGAT GCCTGGGGAG 001360
001361 GGCCCAGCCT GGACTAAGGC CCAGCGGCGG GAGGAGCCTG GGTTGGAGGC CGGGAGCAGT GGGGCGAACG GCAGCAAATA 001440
001441 TTTATGGAGC CAGGTCTGTG CCAGGCTCAG GGCTGGGTGT GGCGAGATAA GGGGGCCAGG GGAGGCGCCC GGACTTGGCC 001520
001521 TCCAACCCGC TTGCCCCAGG GAGGCCGGGA GCCGGGCAGG GGGAGGTGCC CGGGAAGGAG GGCTGGGCGC TGGGGTCGTG 001600
001601 CAGGCAGGGG TCCCCGTGGA GCCTCGGGCC CCTCTGGAGA GTGGTTCACA CTTCATAGGT CAGCTCCAGC CTGGTTGGTA 001680
001681 TGAAGCCTTC TCCCACGAAG AAGCCCCGAG CACTCTCGCT GCGGTGGCAC CTCCCGGCTG TCCCCGGCTT CCCCTTGGGC 001760
001761 ACCAGTCTGT GTTTTGTTAA TAGCACCTGA GGTGGAAACA GATGGGCTTc aaggaagcaa gtcacatgga attggacccg 001840
001841 aatgcagatt atcaaataag tatctgtgtg tctacactga tacaaagaaa tACGAGGATG Aggccgggag tgttggctca 001920
001921 cgcctgtaat cccagcactt tgagaggccg aggcgggagc atcacctgag gtcaggagtt ccagaccagc ctggccaaca 002000
002001 tagtgagatc cctgtctcta ctaaaagtac aaaaattagc cgggcgtggt gttgcgcgcc tgtaatccca gctactcggg 002080
002081 aagctgaggc aagagaatca cttgaatcca ggaggcggag gttgcaatga gccgagatcg caccactgca ctccaacctg 002160
002161 ggcgacagag cgagacttga aagaacgaaa gaaagaagga agggaggaaa gaaggaagga aggaagggag ggagggggaa 002240
002241 agggaaagaa agaaagaGGC AGATGAGCGA GTTAGCAGGA AAAGGTGAAG GAACACATCT CTCTTACAGA ATAAAAtttt 002320
002321 tttttttgag acagagtcct gctctatccc ccaggctgga gtgcagtggc acgatcactg caaccactgc ctcctgggtt 002400
002401 caagcaattc tcctgccgca gcctcccgag tagctgggat aacaggtacg cgccaatgtg cccagctaat Gttttttttt 002480
002481 ttttttgaca cagagtctca ctctgttgcc caggctggag tgcggtggcg cgatctcggc tcactgcaag ctccgcctcc 002560
002561 agggttcaag tgattctcct gcctcagcct ccccagtagc tgggactaca ggtgcccgcc accacacctg ggtaattgtt 002640
002641 tatattttta gtagagacag gatttcaccg tgtcagccag gatggtctca gtctcctgac ctcgtgatcc acccgccttg 002720
002721 gcctccgaca gtgctgggat tacaggcgtg agccaccgcg cccggcTGTA TTCTTAAGAA CTGTCTATCt actcccccat 002800
002801 tctgaagaag ggagcttaat tcccccacag cccaaatgcc ccgtgggctg cactcggcgg cttgtttaca aagactagat 002880
002881 gaatggaaag gaaggggggt cacatacagt ggggagagct ggcaaacacc acccctgcca ggtgaccagg gtggtcaagc 002960
002961 atgggtgagc agacatgaga acacgcacct cctgatagga ggcgaagaga agggATTTTT TTTTTCATAC TAAAAAAATT 003040
003041 TTTTTggctg ggcgtggtgg ctcatgcctg taatcccagc actttgggag gccaaggtgg gtggatcacc tgaggtcaag 003120
003121 agttcaagac caacctggtc aacatggtga aaccccatct ctactaaaga ttaaaaaatt agctgggcat ggtggcgcac 003200
003201 gcctgtaatc ccagctactt gggaggctga ggcaggggaa tcgcttgaac ctggaaggcg gaggtcgtag tgagctgaga 003280
003281 tcatgctact gtactgcagc ctggacaaca agagtaaaac tccatctcaa tttaaaaaaa atgttttttg aagagaaagg 003360
003361 gtctcactgg gttgcccaga atggttctct aactcctggg ttcaagcgat cctccctcct cagcttacca gatagctgga 003440
003441 actataggtg tatgccacca ggcctggcta atttttaatt tttaattttt ttttagaggt ggtgtcttgc tatgttgccc 003520
003521 aggctggtct caaactcctg gcctcaagca atccacccac ctcagcctcc caaagtgctg ggattacagg tgtgagccac 003600
003601 cttgcttggc cCAGAGGGGC ATTTTGTGTG TGTAActgtc gtcctagcta cacgggaggc tgaggcagga gaaccacttg 003680
003681 agcccagggg ttggaggtta cagtgagcca ggatcacacc actgcactcc tgcctgggca acagagcgag actccatctc 003760
003761 aaaaaaaaga GGTTTTTTtt tttttgcgtt tttgttattt attgattgat ttatgtatta gttcatcagc tgttagtgta 003840
003841 ttttatgtgt gacctgagat aattcttcca atgtgggcca gggaagccac aagattggac acccctgCCC TGCaggcttc 003920
003921 agaggcagtg tggccctgcc gacaccttga ccccagactt gcagccccag atccctggga cagcacactt ccgtGCTCTG 004000
004001 CTTTGccagg actgctctaa actgtcaaag tcatcagaac gaggcaagtc tgagaaacag tggcagacag taagagatta 004080
004081 aggaggcatg acggtgagac gccatgtggt atcctgggtg ggatcctgaa tggaaaaagg tcgttcgtga catctgagta 004160
004161 aagggcagag ttttgtgctg tactagtgtt tgcttcttgg ttttgacaga cgtgccatgg taatgggaga cgagaacatt 004240
004241 tggggaaatt gggtgagggg tctgtagcaa gtctactatc actcactgca gctctactat cccgtcttaa atgtttctaa 004320
004321 acaaaaaagt ttatgtaaga aAGAAAACCA GGTGGGCTTA TGGGTACTTT TGCCACACTC CCCACCAGGC TATTCACACA 004400
004401 GAAGCCAGGG AGAATCTGTC ATACCAGGAG AGGggagttt gtgttattca ggtgtatgtc tttgtccaaa tgtatcaaat 004480
004481 ggtaacttgg gaaatgtggc atttcactgt attttaattt tactaatgac aagaagctta aatatttgat atcttgttat 004560
004561 gttatgcatg ctaaTAAAAC ATCAAACAAA AAAGAAAAAG TTTTTTAAAA ACCAAAAAAA aatgttatgc atgctgaagt 004640
004641 gtttaggagt gaactgatat gttgctttga gaattgcaag ttgcatagag aaagatgaat atatgagaac tctctgtgct 004720
004721 ttctgttcaa ttttgctatg aacctacaac ttctctaaaa aataaaatgt attaatttta taaagatgga tgatggatga 004800
004801 atcaatgatg gatagatgga tggatgatgc atgaatggat aggtgaatgg atggatggat gatggatgga tgaatggatg 004880
004881 gttggatgaa tgggtgaatg gatggatgga tgatggatgg atgaatggat gaatgggtga atcaattgat gaatgaatag 004960
004961 atggatggat gggcagatgg gcagatggat aaatgaatga atgaatggat gggtgaatgg atagatggat aggtgaatgg 005040
005041 atgatggatg aatgaataga taatggatga tggatgaatg ggtggatgga tggatggatg gatggatgga tggatggatg 005120
005121 gatgaatggg tggctaaatg gatagatgca tagatggatg gatgatggat ggataggtga atggatggtg gatgaatggg 005200
005201 tggatgggtg aatgaatgga tggatggttg ggtaaatggt tggatgagtg agtagataga tggatggatg atggatgagt 005280
005281 gaatggataa atagatgggt aaatgatgga tggatgggtg gatgaataga tgaatagatg gatggattat ggatggatgt 005360
005361 atagatggat ggctgatgga taaatgggtg aatggatgaa tggataatgg atggatggat gggtgtatgg aaggatggat 005440
005441 ggatgtggga atggatgggt tcatggatgg atggatgAAT GTAGAGAATG GGTACATAGA CATTCGCTGC ACAATTATTT 005520
005521 TTATTTCCTT ATGTTTTTAT ATTTTTATAA TGACACGCTA AAAGGAaaaa ggaacgtcga atcctgtcag cctctgcatg 005600
005601 aattcctcca agatttccat ctcattttga tcagaaattg ggttctcatg actctctacc caatctggta ccccatcacc 005680
005681 tccttgatct cctctcccat tgctccctcc tttgctcact cctctccagc cacattggcc cctctgctcc ttgaacactc 005760
005761 cagctatgtc ccctcctcag aacttttgca tcagatgtgc ccttcctctg ggacacatcc cagttatctg cactgctctc 005840
005841 tcgttcagct cttggcctac acaactgaag ttcctacatg ccctgtcttg cattgtcttt ctccatagca tttctctttc 005920
005921 tctaagacgt tttataattt actttcttgc tatgttttct tgcctgactt ccctcactag aatggaagcc ccacctaaag 006000
006001 agggattcat ctattttgtt aaccaatgaa taagctgcac cttggacagt gcctggcaca tagtagaggc tcagtaatga 006080
006081 gttttaggat gagtgaatGG AAGACTGAAT GAggccgggc gcagtggctc acgcctttaa tcccagcact tttggaggct 006160
006161 gaggcggaca gatcacctga ggtcaggagt tcgagaacag cctggccaac atggtgaaac ctcatctcta ctaaaaataa 006240
006241 aaaaattagc cgggagtggt ggcacatgcc
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Predicted Small Protein

Name NONHSAT068048_smProtein_5765:6028
Length 88
Molecular weight 9912.7965
Aromaticity 0.137931034483
Instability index 57.0425287356
Isoelectric point 9.03924560547
Runs 11
Runs residual 0.0118226600985
Runs probability 0.0533876122112
Amino acid sequence MSPPQNFCIRCALPLGHIPVICTALSFSSWPTQLKFLHALSCIVFLHSISLSLRRFIIYF
LAMFSCLTSLTRMEAPPKEGFIYFVNQ
Secondary structure LLLLLLEEEELLLLLLLLLEEEEELLLLLLHHHHHHHHHHHHHHHHHHHLHHHHHHHHHH
HHHHHHHHLLLLLLLLLLLLEEEEELL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHHH
HHHLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTTTTTTTT
TTToooooooooooooooooooooooo