NONHSAT068156

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT068156

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1782 nt

Genomic location

chr19+:56989243..57006805

Exon number

2

Exons

56989243..56989750,57005532..57006805

Genome context

Sequence
000001 AGAATCCACC GGGGTGCAGC GAGGCTGTGG AAAGTCCCAC CCAGAACGTG AGGTGAAGAA GGCTTGGGCT GCGCTGGTTC 000080
000081 TGCTCTGTCC GGGTCGGAGA TGAACTGACC CGGGAGAGCA GCGGAGGGAT GTTTCTTTTG GCCAACAGTG GGGACTCACC 000160
000161 TGCACGTTTT GCGAAGAGGC CCACAGTCCT TTGCGTGGCG CTCGGACTAC ATTTCCCAAC GGCCCCTGCA CGCCCTGGGG 000240
000241 GCTGTTCCAT GCGGTGTTGC GCCTGCGTAG CCGGCGGGCT GGCAGTGAGA CTGACTGCGT CGGGGTTGAG ACTGGGTGGA 000320
000321 TGAGGCTCAC CCCGGCGGGG AGAAGGGACG AGGAGGGGCG GACAGCGGAA GGTCCGGGAG TGTCCGCCAT AAAGTCGTTT 000400
000401 GAGGTGACCG TTGCGTAATT GTGAGTCTGT GAGAGAAGAT GTGAAGTATG GCCTCGTCCC GGTCATCTGG GCGTGCGGGT 000480
000481 CCCGGGTTTT GATCGCGCGT TTGTGTAGTT TTAACTTCTA GTCATGGCGA ATGATCGCAG GAGAGCACAG ACTGGACCCT 000560
000561 GCTACGATCT CTCTTGGAGT GGATCAGACT GATGATCACC AACAACCAAC TCATTCCCGG ATAAGGAAGA AGAGAGTGTC 000640
000641 ACCTACTTCA GTGTGGTTTC AACCCTACTT CTGCATCTTA AAGACACTGT ATGGTTTCAG CAGTAGTGCC CCTGTTCATT 000720
000721 AGTCCCCCTG ATGTTTTCAT TCCTCATCTC ATCTTTTTCT TAGCAGCATT CAATGAATCC TTCATTCTAG AAACACTCTA 000800
000801 TATCTTTGGT TTTCATGAGA CCATTCTCAC CTTGTTTTGT CCTGTGACTT TTTTGAAAAA AACAAAAACA AAAAACCCTT 000880
000881 TTTTTCTTTT TAAATTCTGG TAAAAAACAC AATGAAAATT TGCTATCTTA ACCATGTTGA AATGTGCAGT TAGTAAAGTA 000960
000961 CATTCACATT GTGGTGCAAG CCATCACTAC CATCCATCAC TAGAACCCTT TTCATCTTGC AGATCTGAAA CTCTACCCAT 001040
001041 TAAACGACTT CCCATCTTCC CATCCCCACA GCTCCTAGCA ACCAACATTC TACTTTCTCT ATCAGTTTGA CTACTCTAGG 001120
001121 TACCTCATAT GAGTAGAATC ATACAGCATT TATCCTTCTC TGCCTGGCTT ATTTCACTTG TATAATGTCC TCAAGGTTCA 001200
001201 TTCATGTTGT AGCATGCATC AGAACTTCCT CCCCTTTTAA AGGCTGGATA ATATTTCATG GTATGTTTAG ATCACATTCT 001280
001281 GTTTATCCAT TCATCCATCA GTGAACACTT GTGCTCCTTC CAACTTTGGG CTGTTGGGTG TCCTGCCACT GTTGCTCCTA 001360
001361 GTGCTCAATC TCGTTTATTC CCTCCTAATC AAGTGTACAA CGTTGGACAC TGTGCAGGAT GATGCCACTT CATCTTGGAT 001440
001441 GCTAATCTGC CATGTTGACT TCTGATTAAC CCCAGGCCCA GGAATGCCTC AAGATTTCTA CTTTACTTAC TGTTGCTTGT 001520
001521 GTAAGCCAAG ACAACCTTGA TGTTATCATA AACATGTACT TACCTAAGTC CTGTCCTTTG GCAAATTATG GGCTATGAGA 001600
001601 CACAGCATTC TTGCCTTTCC CTGAGGGGTC AATTTCAGCG ATCCTACACA TTCCTTCTGA AGCACTTATG CTCTTTCTAT 001680
001681 ATGGTATGTA AGCTCTCGGT CTGGGGAGTA ACAGTGCAGA GATCTACCTG TCTTGTTGCC ACATGTTTCT AAACTTTCCA 001760
001761 ATAAATCACC TTCTACTGAC AA
[back to top]

Predicted Small Protein

Name NONHSAT068156_smProtein_128:322
Length 65
Molecular weight 6445.639
Aromaticity 0.046875
Instability index 53.3734375
Isoelectric point 9.93939208984
Runs 11
Runs residual 0.02328125
Runs probability 0.0492685198569
Amino acid sequence MFLLANSGDSPARFAKRPTVLCVALGLHFPTAPARPGGCSMRCCACVAGGLAVRLTASGL
RLGG
Secondary structure LEEEELLLLLHHHHLLLLEEEEEELLLLLLLLLLLLLLLLLLHHHHHLLLLEEEEELLLL
LLLL
PRMN -
PiMo -