NONHSAT069714
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069714 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3137 nt |
Genomic location |
chr2-:27252115..27255251 |
Exon number |
1 |
Exons |
27252115..27255251 |
Genome context |
|
Sequence |
000001 cccggccACT GTTTTTCTTT CCTTTCTCGT AGAGCTGGAA GGATGGAAGG GAAGTAGTGC TCCTCATATC TAGGGAGAGA 000080
000081 TTGAAGATTA AATGCTTCCT TCCTTCTAGG AAAGTGCTGG CTTTACTGTT GCTAGTGATT AAACCTCGGG TTTAATGGGC 000160 000161 TATACAAATC TATTGCCAAA GAACAAGGAA GAGGATGGGG GCTTGAGGAA AGGGCAGAGT GTTGGGGAGC TGGGGTAGGA 000240 000241 GGTGGAGAAT GGAGAATAAt tttttttttt ttttttgaga caggatcttg ctttgtcgcc caggctggag ttcagtggcg 000320 000321 cgatcacgac tcactgcagc ctcaacttct agggctcagg tgatccccca ccacggatca cctgacccac caccaccccc 000400 000401 ggctaatctt tggtattttt tgtagagact gggttttgct gtgttgccca ggctgatctc aaactcctgg gctcagtgat 000480 000481 ccaccctctt cagcctccca aagtgctggg attacaggag tgagccaccg ctcctggccT CTGAGTTCTT CTCATGGGAG 000560 000561 GCTGAGAAAA GTCTGGGGGT CTGGGACAGC CAGGGCCGGG TTTCCCCTTC CAGGCAATGA GAAAGAACAG GCTCTGCCTC 000640 000641 CCACCATAAG AGTCAATCCC AAGTTCCAGA TGTGTCAGGG AAGCGATGGA GAGCCCCAGA CTTGAGGCAT CTGCAGACAG 000720 000721 GTTCCTGCTC AGACATCCAC GTGGAGGGTG TTAGTATCCT GGGAGCCTTC AGAACCTTGA AGCATGccag cagaggagaa 000800 000801 tgagggaaga taaaatcaaa gtgacttatc acaattaagg aaatgtgcta tttcatgtac aactgtgtgt gaggatgaga 000880 000881 ttcctacctg ccataCTGAG GTATTATGAT AAGAACTAAG AGAGTCCAAA TTCCTACAGG ATGAACAGCT GAGGGAGCGA 000960 000961 TGCATTCCTT AGGAAGGAGT TTAGCTTCCC GAAGGAGACG GCAGCTGAGA TAGGTTCTGA GAAATAGCAT TTTCATTGGT 001040 001041 TCCccgggcg ccgtggctca cgcctgtaat cccagcactt cgggaggccg aggtgggtat cacctgaggt caggagttcg 001120 001121 aaaccagtca ggccaacatg gtgaaacccc atctctacta aatacaaaaa agtagccagg tatgatggcg caggcctata 001200 001201 atctcagcta cttgggaggc tgaggcagga gaatcgcttg aaccttggag gcggaggttg cagtgagccg agattgtgcc 001280 001281 actgcactcc aacctgggca acaagagcta aactccgtct caaaaaaccc aaaacaacaa caacaacaaa aaaCAAAATT 001360 001361 GAATGTTCAC TGGCTGAGGG TTAGGGTGGG TGGAGAGAAA ATGCCAGTTG TGTGGATCTG TTGATGTAAA ACAAAGGCCT 001440 001441 AGAGGGTGGT AAACTGGAAG CAGTTCAATG GGACAGTGCT TGATGGGACT TTGGAGGTGA TGAGGTTtga tatagtttgg 001520 001521 atttttgtcc ctgcccaagt ctcatgttga attgtaatcc ccagcgctgg cagttgggcc tggtgggaag tgtttggatc 001600 001601 atggtggtgg atccctcatg gtggatccca gttctcatga gatctggtca tttaaaagtg tgtggcacct ccccaccacc 001680 001681 tctctctctc gctcgcttgc tcgctcctgc ttttaccatg tgatgtgcct gctccccctt tgccttccgc catgattgta 001760 001761 agcttcctga ggcttcccta gaagcagatg tcagcattat gcttcctata cagtctgcag aactgtgagc caattaaact 001840 001841 tcttttctta taaattaccc agtctagatg tttctttata gcaatgcaac aatagcctCT TATGAGTTTG GAAAGGGATC 001920 001921 TGAGCCCATA TGCCAAGGAA CTTGCCTGCC AAATCTGGAC TTTATCCTTC AGGCCCTGGG AGACCAGTGA GAGGGTGGCA 002000 002001 TAATCCACTC TTTTGGAAGG GTAAATGTGG CTGTGTGAAG TGTTGGTAGG GGAAGGCAGG GGGTGGGAGA TGAGCATATC 002080 002081 TTGCTGCCTC CTTCTACCTG TCCTCCAGCC CCCTTAGGCC TGACCATGGC TGACTTTGCA TCCGGTAGCT CTGAGATACA 002160 002161 GTGCCTTTGC CAAGGACCAT ATTTGAACTG ATCATTAATC AATTCATTTT GCAGATCATT GGTTTAGGTG TACTCAGGAG 002240 002241 ACCAACAACA ATATCTTCTC TTTGTTTGAC CCCTCCTGTG TCACATGTAT GATCACAGAA GAGACCATGT TTTTGGAAGA 002320 002321 GAAACAGAAC TGGCTTTCCA TTGAGGCAAA TGAGGGGGCT GCCCCATGGT GGAGACACAC AGAAGGGTGG GAGAGGGACT 002400 002401 CTATCTTTCA TTGGAATAGT CTAGTAAGTT ACCAGTTCTA ACTTGGCATC TAGGACATAT AAATCATGCa tttacttatc 002480 002481 cagcaacctt ttctaagcac cttctctgtg tcaggccctg tgctaggtgg agctggaaga tatagctcac ttgcttgtaa 002560 002561 ggaacttgaa gtctgtgtgg gggacaaatg tataaacaga aaattacagt tcaccatctt agtgttccag aggaaagaag 002640 002641 cacttagtat gaggtaccag gaagaggtgg ggagaaggga gtgGCTTTAC ATCCTTAAGT TCTGGGTGTT TGAAGAGCAG 002720 002721 CCTTAGACAC TAGCCACGGA GGTGGGCTTG GGTAGGCCCC GCCGTGGGGT TTGAAGACCC AAAAGATGTT GGGTCAAGGA 002800 002801 GGACATGGGT GTCTAGTGTG GGAGCAAGCA GAAGGGTGAG CTCACCGAAG CACTGTTTTA CCCACtgtac tacgtttcta 002880 002881 ttgctgctaa aacaaattgc cacaaactta gtggcttaaa acaagggcgt tatcttccag ttctggaggg caggagtcta 002960 002961 actcaggtct ccctgggcta gaatcgaggt gtcagcaggg ctgggttcct ttctggaggc tttgggggag catccatttc 003040 003041 cttgccttgc ccagcttcta gaggccacct gcattcctga gttcatggct cccttctgtc ttcaaagcca acaacagtgg 003120 003121 gtgagtcact ctcacat |
Predicted Small Protein
Name | NONHSAT069714_smProtein_2465:2725 |
Length | 87 |
Molecular weight | 10043.6501 |
Aromaticity | 0.127906976744 |
Instability index | 53.3441860465 |
Isoelectric point | 8.53436279297 |
Runs | 16 |
Runs residual | 0.0464248524818 |
Runs probability | 0.0457350733086 |
Amino acid sequence | MHLLIQQPFLSTFSVSGPVLGGAGRYSSLACKELEVCVGDKCINRKLQFTILVFQRKEAL SMRYQEEVGRREWLYILKFWVFEEQP |
Secondary structure | LEEEEELLLEEEEEELLLLLLLLLLLLHHHLLEEEEEELLLEELLLLLEEEEEEEHHHHH HHHHHHHHLHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |