NONHSAT074964
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT074964 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3704 nt |
Genomic location |
chr2-:152643937..152649559 |
Exon number |
3 |
Exons |
152643937..152645761,152645806..152646396,152648272..152649559 |
Genome context |
|
Sequence |
000001 AATGAATTCT CACAAGTCCA ATCGCTGTGT CAAAGCATAT GGCCTTTTAA AAGGCTTTGG TAGCCTGTTG CCTAATTGTC 000080
000081 TTCCGAAAAG ATTCCCCACA TCCTGGTCAA TTCTTCAGCA TATACACGGC CATCTCTATA TTAAGACACT TTATATTAAG 000160 000161 ATTTGTAAAC CTGTTGACTA CTGTCACAGG CCACCACCAC TCTGGGCATC TTCAGGTCAT GCTACATGTT CACCAGTCCT 000240 000241 TCCAGCAGTG GGCAGTGCAA AGCTTCCCTC CGCCCACAAG GTTTCTGTGA TCTTTAGCCT TTATTGTGCA GTTTACTTGT 000320 000321 TAACCGGCTT ATAATGTATT CAGCCTATGC TAATCATTGA CTCCTTTTGG GAAGGGTAGA AGGTAAAAGA TGTATACAAT 000400 000401 CTCTCAGCTG ACCTTTTTTT AATGTTGGGG AAGAATAATG AACAACTTTT ATTATCTACC ATAGACGGCC AGTCTTCTGC 000480 000481 TTCTAGGATG CTCTCCCACC AATGTGTCCA TCTATGCTGT CAGCCCTAAA TGCCAGTCCT GTGTAGGAAG TCCTGTGTTC 000560 000561 ATTCAGAAAA GTCACCCAGT GTCCATCCAT TTATGTCCAT CATATTAAAA ACAGTTGAGT TATATGATAA AACATGCTAC 000640 000641 CATTAAATAT TTTAACAGAT TTAAATAATA TGAGGAAATT ATTAATGGTT GTGACATGTT AAACAGGATA AACAATTTTT 000720 000721 TTATAATATA AACTTTTACA TCTATCATCT GAATTATGCG AGAACAAAAA ACATAGAAAA AAGATAGGAA AGTACCTTGG 000800 000801 GAAGCTGAGG CCGGAGGACT GCTTGAGCCC AGGAACTCAA GATCAGCCTG GGCAACATGG CGAAACCCTG TCTCTACAAA 000880 000881 ATGTTTTTTA AATCTAGCCA GACATGGTGA CAGGTACCTT ATAGTCCCAG CTGCTCAGGA GGCTAAGGTG AGAGCATCAC 000960 000961 TTGAGCCCAG GAGTTCAAGG CTGCGGCGAG CTGTGTTTGC ACTCCAGCCT AGGTGTCAGA GTGAGACTAT GTCTTTAAAA 001040 001041 AAAAAAAAAA GAAGAAAGAA ATGTATTATA ACATTAGGAG TTGTAGGCGG CAACATTACA ACCAGTATTT TTCTGATTAC 001120 001121 GATTTTGTAT GTTACAGATA TTCTATATTG AGCGCATTAT ACCAATAATC AGAAAACATT GCTGAATCAT TTTGTCTTTA 001200 001201 AAGAATCATC TAATAGGGAT GGGAAGGAAT ACAAAAGTTG TATTAAGTAA ATGGGATGAA GCTCTCAGTT CAGAGATCAA 001280 001281 GATGATTGGG GGATAAGAAG AAGAAAAACA TTCCTGCAGG ACTGGTCTGG GCAGAAGAGG AGTTGTGGTA ACTAGATATG 001360 001361 AGGAGAAAGA GAGGAAGGAG GCACAGAGCA GTTGGAGCTT GCTGCCTGGA AGAATGACGG TATGATAAAG AGATGGGATG 001440 001441 ATGTGAAATA ATTCACATTG TTAATTATGA AGTGTGTTTT GAATCACCTC AGTGTTACCC AGAAACGACA CTCGGTTATC 001520 001521 ATGTTCAGAT AGGGGACAAT GTGTTTTTGC AGTGATAGCA GTGGAGGGGA AGGGTTGTCA GCTTAAGGGG CAGTTGGTCA 001600 001601 TTCTGTCATC AAATGAATTA GTAGCAAGAC TTGACCAGCA TTTGTGAATA ATGAAGCTTT TCTTGCTGAC AAACTGCTGA 001680 001681 TGTTTACATT GGGCCATTAT AATAGGCAAT TTAATGTCAT TAATGACCTT TATATAAAAA ATAACTCGTG AATGAATGAA 001760 001761 TGTAGTGAAC ATTAAGTACT GCTAATAGAA AAAAAAAGGG CAAGGCTTCT TTGCCAACTT GGCAGAATGA TCATCAGTAT 001840 001841 TTCTGCCTGT TCTTTGCCTC AGGTACACAC ATATTTATTT TTTAGAGACA AGGTCTGACT GTGTTGCCCA GGCTGGACTT 001920 001921 CAACTCCTCA GTACAAGTGA TCCTCCTGCC TGAGCCTCCT GAATAGCTGG GACTACAGGC CTGCACCACC ATACCCTGCT 002000 002001 CTAGTTACAC AAATCTTAAA ATGATGCTGT TATGTTAATT CAATTAAGAA AGTAAACTAG TTCTATGATC CAAGCACATA 002080 002081 GTTGTGACTC AATTCATGTT GTTGTTTTTA ATCCTGAAAT GATATTGTAA AATAAGAGCT TTGCCTTAAA GTTTTTGTTA 002160 002161 CTCAGTTTTT ACATTTGAGG TAAGAAGGCA AGTGGCAGGG AAGAATGATT AGCAATAAAG CTTTTTAAAA GTTCTTCAGA 002240 002241 AACAGTAGAC AATTGGTTGA GTCAAATTGA CCTATAATGA CTATTCCCAG GAATTTCCTA GTTCTTATTC CTTTGGAAGG 002320 002321 AATTGTAACT ACCTTATGCC ATGTAAAGAA TGCTGCTATT TTACGTTTAT TACAAAGATG TGCCTACAGA TAAGAATCAA 002400 002401 ACTGGAGAAC TTTAAAAATG TTTTAACTTT ACCTGATCTT TTTCTTAGAA AGCTAACTGT AAGTAGGATA TGGTGCCAAG 002480 002481 AAAAATCATC AGCCTGATAC TGTGAAAAAA AGACACCCTA TTAATATGCC CACAACATTA TCAGCAAGCT AAGTAACATC 002560 002561 CCTGGACCTT AGTTTCATTA TATTTTTAAC TAAGTATGTA TCAGAGCCCT TAACACAAGC CCAATATATT TTGGAACCTC 002640 002641 AATAAATAGT GGTTTTGCTG ATTGTCTTTT TAACAATTTC TAAAATATTG AATACTGGTT ATTATAATTA AATGTATTCT 002720 002721 AAACATCTAT TCTTTCTGTC TCATGCCTTG ATCTAGCCTG TTCCTTCCAC CTAGAATGCC TTTTCCTTCC TTTTCTCACA 002800 002801 TAGCAATCTT TGACATATCC TTGAAGACTG AGCTCTCCCA TCAGCCTGGG AGGCCTGGCC TGATCTGGAA GACGGTTCAG 002880 002881 CACGTCTTTC TCTGTTGCCA TAGTGCGGGA TTTTTGTCTA TTTTCAGCAG GTCGTTCCAG ACTGCAAGCC TCTGGAGGGC 002960 002961 AGTGACTCGA TCCCATTCAG CTCCATATCC CCACTACCAG CATGGCATGC ATTGGGGGTG TCCATACATA TACAGAACAG 003040 003041 AAACTTTCAG GGTTTGGCCA ATTTTACTTT TCCTTAGCAT GTATTATCAT AAAGTGATGT AAGTACTATA TGCCTGGATT 003120 003121 TGTCTTATTA CTACATCTAT TTGTTAGTAA AAGGAGGTTA CATGTTGCCT TAGTGGTTTC TTTGCACTTA AATATTTTTT 003200 003201 AAATTATTTG GTTCTTGGCT GGGAACTTAG TCCAATATGT CTGCTAAAGT ATTTCCCATT TCTTGCCACC TCTACAATAG 003280 003281 TGCCATAATT TCCAAGTTGA TTTGACATGT ATCATCTTTA TTCTCACAAT CCTGAGAGGT ATATAGAGCA AGAATTAAGT 003360 003361 TCTACATTTA ACAAAAGAGA AAACACACAG AGATTGATTG GCTCTAGGTT ATATAGCTAA CTGGTAACAA ACCAATTTTT 003440 003441 ATTAAAATTA ATTTTAAAAA TTTAACTTTT AAAGTTTATC TTAAATGATG AACATCGCTT GTGTTTTTCT TGCATGTAGT 003520 003521 TTCTATTTTA GGAGAATTTG CCTAGGGGTA GTTCTGAAAC CAAGTAAAAG TAATTGGATT ATGAAGGTCT TCTACCTTAA 003600 003601 ACTAGCTGTC AACTTTAAAC TCAACCATTT AATAATTAAA TTTAAACTTT ACATTTGTTT AATTTAGTAA TGTTTCTTCA 003680 003681 CATTAATCAA TTTTTCAAAT TAGG |
Predicted Small Protein
Name | NONHSAT074964_smProtein_1028:1150 |
Length | 41 |
Molecular weight | 4542.5818 |
Aromaticity | 0.075 |
Instability index | 58.415 |
Isoelectric point | 10.2272338867 |
Runs | 8 |
Runs residual | 0.0219758064516 |
Runs probability | 0.073849584879 |
Amino acid sequence | MSLKKKKRRKKCIITLGVVGGNITTSIFLITILYVTDILY |
Secondary structure | LLHHHLLLLLLEEEEEEELLLLHHHHHHHEEEEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooo |