NONHSAT075207
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075207 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
3033 nt |
Genomic location |
chr2+:163625446..163654482 |
Exon number |
5 |
Exons |
163625446..163625498,163628441..163628501,163641107..163641246,163641503..163641670,163651906..163654482 |
Genome context |
|
Sequence |
000001 ATGTTCAGAA CAGCTGCTTC TTTTTGGTTG CTGGTGGCAG GGATATTATG GAGGCAACAG ACGCATGAGA GTGAGGTATT 000080
000081 TATCTGAGGG CGATTGAAGT CACCAGCTTA ACAGTAGTGG AAAGACCTTA AGCCAGAGAA CTCCAGGTTC AAGAACCACC 000160 000161 ACCTGCAAAC TTGGCAAATT TGGACAAATG TCTCTCTGAG TTTCATTGTC TTCATCCACA AATAAAGCAA GATTACTTCG 000240 000241 CCTACAGAAT TGCGAAATTA TGACCAGACC ATGAGGGTAT GAAGGATGAG GAAAAGGGAG CAGTCATGGA GCTGTTTTGG 000320 000321 AGGGAGTCAT AATTCCTTAG ACCTCTGACA ACTGGAACTC TCAATCTGCC AGTGAAAGCT GACATGAGCC CAATAAGGAT 000400 000401 GGTCTTTTCT ATTCAAAGAT AGGGACACCC TCTTTTTAAA GGACATTCAA TTCAAATGTA TCTTCTCTGG TTAAAGTATG 000480 000481 GTGAAGTCTG TCCTGTGGGC ACTCCCCATT GACTCCTAGC AGCTCTTGAG CCCCATCTTC AGGATCCGTA CTTTGATAGT 000560 000561 CACTGACAAT TAGCTTTGAA AATCTATAGT TCCAATCCTG TGAAATGAGA AGAATGTTGA AGCTATAAAG GAGGTCTTTG 000640 000641 CCTGCATTCA GATTCTGACA CCAAAGACTC CTCTGATTAT ACTGAAGTAT GTAAGAAAAC CTTCTCTTGA AATCAAGGAC 000720 000721 CATTTCTCTT CATCTTATCT TGAGCTACAT ACCAAATATG AGTACACATA GTTAGGATTC AATAAATAAT TTAAGATACT 000800 000801 TGTGAACACC TTGCTCTGAC TGGTTCTATT TTTACATTCA GAGAGGAAAG CATCCTGTAT TCTCCCTATA AACAAATCTA 000880 000881 GGAGAATAGG GTCATGGACA TCGTATGTAC ACAGAATTAC AGTCCGATGT TGGGTATCTT ACTCCTGTGA AGTGAAGGGA 000960 000961 AATAGAAAAG TAAACAAAGA AGACCACAGT ATAAGATGTC ACCTTAAAAT ATAAACCTGA AGACAAGAAA AACCAGGCTC 001040 001041 AAGGAACAAA TGAGCAGGAA AGTTGAAATT CTAGAATACA TTTGTTTTAT ACCAATATTA TTTGCATCTT GTTTAAATGA 001120 001121 AAAGTTGTTT ACATACACAA TGGATGACTA CAAAGAAACA GCATGGAAAC TGGAATCAGA GGCCTGTGTC TGAATTTCAT 001200 001201 GTCTACCACT GAACAACTGC ATGACACTGG GAAATTTACC TAGTTTCTAT AGACCTCATT TTTCTTATCT GTAAAATGGC 001280 001281 TTCCACAATC TGAAACTCAA AGGTCTCTTG ACAAGATTGA ATGTGATAAT GCATGTAAGG GATCAGGACG AAACCCAGCA 001360 001361 CAAAAAAAGA CTGCAAGCCA CACTGTTTAC AAACACCGTT TCCAAGTAAA AAAAAAACCT GCTCATTGAA ACTGAAGGCA 001440 001441 CCAGTGTCTG TTGGGTTCAG CACGTAGTGA GACGCTCAAC TACCTGCCTC AGGTAAGCTT AGTGTGCTTA CGTACTTCAC 001520 001521 TAACGATAGC TAGTTTAGAG GTTCTTTCCT CGTAATTCAG GTGATATAAT TGCTCTATGG TTATGCCCTA CCCACCTTGT 001600 001601 CTTAAACAGT GCAAAATATG TGATATCATT ACACATTTCT TATCAGGAAA ATATTTCAAA GGGCAGGCAC TCTCTGTGTT 001680 001681 TCCTTAGTAA CAGCAGCTAT GTGGAGCATC TTCTGTATTA TGTTTAACAT GGTGCAAATA TGAACAAGTA ATCACAACTC 001760 001761 CTGTGCACCA GCAACTAGAG AAATGTAGCT ACAATAAAAT AGGTGGCATT CATATTTGTT TGTTGGCCAT ACCTGGGACT 001840 001841 TTTTAAGAAC CTGTTTTTGG TTAATCTTGT TTTTTTTTTT AAATTCTAAA CCCTTTTTTG TGTAATGTTG CAGCAGAAGC 001920 001921 GAGGGTCTCA GAAAACATCT CCTGTTCTGA TCTGGCACAG TTCCAATTAT ATGGATAACC TTCCATTTGT AAAGCTCTGA 002000 002001 AATAAGTGTC ACAAGGATAC GTAGATTTAA GATGCAGGTC CATCTAGAAG AAGTACAATC TGGTTGAAGG ATGGTGGGGC 002080 002081 AATACAACAA GTACATAACT CACTTTGTTG CAAGGCATAA TTGGTAAATC CTCATCTACT GGGACTACAG AAGTTTGACA 002160 002161 ACCCCTGTCT CTCGTGTCTT ATGGCCACCA ATGACTGCAG TCTTTCATTG TGAATTTGGG TTTCGTCTCA GAAATCTTCT 002240 002241 CAACATGATG CTCTGTCAAG CCAACAATGT TTGAGCAGTC AGCCATTTGT TTAATATCTC TGGATTATTG CATTGGTAAT 002320 002321 TCTTGCTGAA AACACTCAAG TCACCTGGGA GAACTGATCT GTTTATTAAT AGCTTTTAGG ATTTCAACAT TTCATATTTA 002400 002401 AACAGAGAAA TCTAACATTA CTTGACAGAA AACAGGAGTG GTCATAGGAA TGAAAAATTC ACATATCTTT GGGAACCAAG 002480 002481 TTATTATTAT CAATGAGTGT CATGGACTGG ATAAGAAAAC AAGGACTGGT TGGACCAGAA TTATAGCAGG ATACAGACAC 002560 002561 AAAGGCATTT AAATTTTAAA ATTCTAAGAA TGAAATATAA CTATAGTAAA TACATCTTTG GACTACTTTT GGCTTATGGA 002640 002641 TCATGGTTTG CAAACCCTTG ATCTGTGACA TAGATGTTAA AGGTGGGGTA ATGAGGTTGT GTGTGCAGAT CTCCAAACAC 002720 002721 CAGAGCATCA TGGGCAGCAC TAACCTGCAT GGTGCCCTTA GGAGGGCTGT AAGCCAGAAG CAAGTTCTCC ATTCTGCCCT 002800 002801 AGTCAGGCGT GACTATACCA AGGCTTATAA CTGGAGATAC AAGCCAAGCC ATATACCTGG CAATTCAGCA AAGTTCAGAG 002880 002881 AAATATGGCA TGAATTCATA CAAATTAATC AAGTGCATAA CATTAAGAAA CTGCAATTTT GAGTTGTGCG TATGCTTATA 002960 002961 GTGGCCCATT TCTAAATTAA AAGGAAGACT ATTTCTGTTA AAAAAAAAAA AAAAAACAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT075207_smProtein_2642:2941 |
Length | 100 |
Molecular weight | 11512.3969 |
Aromaticity | 0.0808080808081 |
Instability index | 40.0292929293 |
Isoelectric point | 10.1603393555 |
Runs | 11 |
Runs residual | 0.0225787284611 |
Runs probability | 0.040331775626 |
Amino acid sequence | MVCKPLICDIDVKGGVMRLCVQISKHQSIMGSTNLHGALRRAVSQKQVLHSALVRRDYTK AYNWRYKPSHIPGNSAKFREIWHEFIQINQVHNIKKLQF |
Secondary structure | LLLLLEEEEEELLLLEEEEEEEELLLLLEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |