NONHSAT076830
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076830 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7388 nt |
Genomic location |
chr2+:217661116..217668503 |
Exon number |
1 |
Exons |
217661116..217668503 |
Genome context |
|
Sequence |
000001 ttctgcagaa agagagtgcc ttttccccct accgtattct tcgctgcaac tcagggaagg attctcagtt tccctacttg 000080
000081 ggctacgtgt cACTGCTGCC TGAACACAGA CCACTAGGCT TTGTTCGTCC TTAGTCCTAC GCCCACTCCT CCAAGTAGCA 000160 000161 GAAGAAAGAC GATGGGAATG TTTGCCGAAC AGACAACACC CAAGAAGTAC TCTAGCAGGC CTAAAACCTA AGCAGGTGAT 000240 000241 GTAATCCTTT TTTCTATTAT CTCCAGAGCC CATCAGCATA GTTGGTGTCT ACTCTTCCTT CCTATGGCtg atgggtataa 000320 000321 gccaatcatt gctgttcctc ttctcattga cagtgattgg tttaggtaca agcatgtgat gtgatcctgg ccaatatgat 000400 000401 gtaaggagat aacaactaga agagttctca atccttaaga agcttaatct cttttgctgg ccactatcca gcctgtaagg 000480 000481 gatgcctgga actgtcggac ccagcctgca gctgtaagga cctggtcaag gtcaaggttg acatgctgag gatggcacag 000560 000561 cagagtggag ccaggtcctt gaggacctgg ttgagctgtt gagttaacca accctgaagc caccatctcc agggcatttt 000640 000641 ttttttttta atatgagaga gtaaattttt cacctatttt aagccagtgg ttttcaaagt ctggtctctg gaccagaaac 000720 000721 gccaatcagc atcccctggg aacttgttag aaatgcaaat tcttgagtct tacccagaac tacttaatta aaatctctgg 000800 000801 gaggggggct cagctgtttg ccttttaaca agcccttcag gtacatgcta aagtttgaga gccaccattt aagccattgg 000880 000881 agtcaagatt ggaggaggat ttgattctgt ttacttgctg ctgaaatatt ctaagtgGAA TAGTCTTAAC AGAAAGGGTc 000960 000961 tggaaagaat ctagaatcat tccaattcta ccccttcatt tcgtacccgt gactgagttt agggaggAAC TGTATGCGAT 001040 001041 GTTTGCTATG ATGCTGCTCC TGAGGGCTGG GCCCTTTCTC TCTTGAAGTT CTTATTCTCA TTTTTATCAT TATCATCAAT 001120 001121 AAATCTTTAC TTTCTGCATA GAGTGCATAG GGTGAGTCCC ACAGATGCTT TACCTGATGC CTTTGACCTC AAGATGCCTG 001200 001201 TACCAGTTAG GAAACAAACT GGGTGATTAG AAGTGAGCTT AATGAAAGTA ATAAAAAGAT TGTTCACGgg acaggtgtga 001280 001281 tggctcacac ctgtaatctc agtactttgg gaggccgagg cgggtggatc atgaggtcag aagatcgaga ccagcctggc 001360 001361 caacatggtg aaaccccgtc tctactaaaa acacacaaaa aattagttga gcctggtggc Catccctgga acctgcgaac 001440 001441 gtgaccttat tcggaaaagg ggtctttgca gatatcatta agttaaggat cttgagatca ggagattact ctggtttatc 001520 001521 caagtgggcc ttaaatctaa tgacaaatgt cttcgtaaat gaaagagagg gattttagac agaagagaag acagaagagg 001600 001601 aggaggcaat gtgaccacag agatagagat tggtgtgatg aggccacaag acaaggaatg ctgacagcca ccagaagctg 001680 001681 ggagaggcag agaactgatc ctgttgatcc cagagcctcc agagggagcg tgaccctgcc aataccttga ttccagactt 001760 001761 ctgtcctcct ggaactatga gagaacatat tactgttgtt tttaacccac caagtttgca ggaatttatt atagcagcca 001840 001841 caggaaacta atGTATAGGT CCATAGAGAG GACGATATGC CAGGAGCTGT AAGGAGCCCA GACAACCTGG AACAATGCTg 001920 001921 caaggagaga atgagggaat caattcccag cttccccttt cttcattctc tctgacttcc agatagtgcc tcccactggc 002000 002001 caaatccaaa tgaaaactgt agggcaaggg actccccttg atagggcccc taggggttgg cctcctgagg ctcagtagga 002080 002081 tggagaaggt tggacttgga gggacaggtg gaaCTGTCTG GCATGCCCCC CATTGCCCGA AAAGCACAAC TGAACTGTTA 002160 002161 GCATTGAACA GCCATGGAAG GATGAGGTGC AAACATTTCC ATGAGATATA TGTGGCAGGA ATTAGTGCTT TGTGTAGTCA 002240 002241 AGAGGAAAAT AAATTGTCTG AAAAAGCTGG TGGAAGAAGT AGAAAGTTAA GTAATGTTTG AGTAGCGGGA GAAAGATGGT 002320 002321 TGGATGATCC AGGGATGAGA AAGTGATTCC TTATATATGT ATATATTTGT GCTTGGAAGA TAGCTAGAGA TGATGGTGGG 002400 002401 ATAAGAGTAT TAGATATGTG TGAACAGCAT GTGCTTATGA TGTTGGGGAA ATCAGGTGGG AAGAGGGAGG AACTGGGGAA 002480 002481 CACTAACCTC AAGTAGAACT ATGACATTTT TTTCAAATTT CTGGCATTGT GGCAATCAAC AATAGGGTCA CTGCTGCCCC 002560 002561 ATGTAGAGCC CTAACTATCC CTTCTACTGA CAGGCGAGGA CAGCCCCATA AGATCTAGCC TCAAAGTCTA GGAGTACTGC 002640 002641 TTCCCAGAAA GGTAGTGAGT GAGTGTTGAA GTCAGTCCTA TGTCCTTTGA ATAAGAAGAC ACAGGGCTCA GAGGATAGAA 002720 002721 GTTGGGCTGG ATGAATTACA GGGACCTGTG GTCATCATTC TAGAAGCAAT TTGCTAGGCA GGGTCTGGAG GTGTTGGACT 002800 002801 CAAACCCATC ACAGCCACTG TCCTATGAGA TCCTAGGAAA AGTGTTTTGT TTTTCCTGTG TCTCTCTCAG GAAAGTGGCC 002880 002881 ACAATGAGAT ACTTTCTATC TATCTTGAAG AGACTTTGAT AAAAACAAAT AATGGTAAAT AAGCCAGGGG AAATAAATAA 002960 002961 CAATCACTAA TTTATTAAAT TTTCAAAAAT CATCTAATTA CAAAGCAGGG AAGAGAAAAG AAAAGGCTAG GGAGGTGGAA 003040 003041 GATACAGAAA CAATGTCAGT GGGCTAAGAA GAGACAAAAG CATTCACATT TATCAGAAGA GATAACCTTG CCCCCTCTTG 003120 003121 CACTTGTGCT CAGGAAATTT TGCTTCTCTT TGCCAGATAA TCCAAGACGG AGGAGAAGCA TCTCCATGGC ACCTCACTCT 003200 003201 GATTTGCGAG GATTTGGCCA GAGAAACTGT TCTCAAGAGT GTGAATTAGG TGGCAGCTAC TATTTTATGG TACCTCGCTA 003280 003281 TCCACTTTGT AAGGTACGAG TAACAACAAC AACAAGCAAA CCAAATTACC AAAGCACAAA AAAAAATGTG TTCAGTCAGT 003360 003361 TACAAAATGC TCCTCAGCCA GAGAAGTGGG CATCTGACTC CTGGAGGGGC CCTTCAGCCT GTGGAGTATT CTTGTGTGTT 003440 003441 GCAGGTTTCA CAGTGAGCAG AGGCTGTCTC TGAAATGGGC AGAGAACCAG TGGGTTGTAG TAGTTTGCAT ATGGGGAGAA 003520 003521 AGGGAGAGAA AGAGAGAGAG ACTCtgtgtg tgtgtgtgtg tgtgtgtgtg tggatgtgtg GCTGAATGTC ATCTGTGTGT 003600 003601 CTGCACGCAA CATTGTGCCA ATGAAGTTGG ACATGCATCT ATGTGTGGGA TGGGGTCCTG GCCTTGGCAA CAAGGGGGTG 003680 003681 TACGTGTGGG TGTGAGTGAC AGCAGACTCA GAGTCCAGGC CCAGGGCCTC TGGGGACTGT CACCTGCAGG ACTCATCATA 003760 003761 GAGGAGACCA GGTGCTTGGA GTGTCCCCAA AGCAATACAG AGTGCATGGT CATGAGTTTG AAAAATATTC CTGTGAGAGA 003840 003841 TATAAATAAA GCCTCTAAGC CCAAAGCCAG AGTTTTCGAA AGCCAGCCTT ACACACAAGA TAATTTATAG TTGCTGGTGT 003920 003921 CCCTTCCCAT GCATGACTCA GCTCTCCTAG CCCAAGTAGG CCCAGCCTGC TCCAGTAACC TTTGCTGAAA GGGAAGAGTT 004000 004001 GAAGCAAACT CCAAGAAGCC CAATGATCCA ACCACCCAGC TCCCGGACTA GCTCCTGCTG AGCTCCCTTC CTCTGTTCCC 004080 004081 TTTGGGCAAA CTCCAACCAT GACATGGATG AACAGATCCT GGAAACTGAG AAACCAGAGA CTTGGGTACT CCCAGCTGGC 004160 004161 TGGTCCTTGG AAGTCTATTA AACTGGTTCC CGTATACCTT CAGGATCTTG GCGGATTCTG CTACCCATAC AATGGGTATT 004240 004241 GGCTCAAACA CCCTTCCCAC CACTCCCCAG CCTGCCTTCC AGCCATTGGG AGGCAGCAAA ATCAGAACAA AGACCTGCTT 004320 004321 GAAGCTAGAG AGTTTTTCTC AGTCTCAGAG ACTCTTGAGC CCAACAGGAA GAATAAAAAT GAGAGCACTT TTACCTTTTA 004400 004401 TTTAAAAGAC AGTATATACC CATGTCAAGT GTCAAAAATA TGGCTAAAAA GAGGGATAAA TAGTGACATG CTTAAACATT 004480 004481 GTGGTGAATT TGTGGGGGGA GGCAGCCAGC AAGGAACAGG GTTAGTTTTT TCAATTTTCT CCCTATATTC CTCACTTCCC 004560 004561 ACCCACCTTC TTTCGTTATA TTTTTAGCAG ACTCTTTGGC CAACCACGTC CAAAGAGACA GATGCAAGTA CAGAGAGTGC 004640 004641 ATACTGAAAC CAAAGGGTGT TTCTTTTTCT TCTTTTTTTC TTAAAAACCT TCCAGGAGTG TGGAAAGGAC TGGAAGTGCT 004720 004721 CGAAGGTCTT TTTAGCCACA TGCCTTACCC CAACTGGGAT CTGGAACATT TTTATGCCAA GGCCCATATG CCTGATTGTC 004800 004801 CAAGTATAGG GGAAAAAAAT ATCATTCAGG GCTTTAAAAA ATAGTTTAGC TTTTTGATTA AACTGCTAAA CAGCCTTGAA 004880 004881 TAAAATATTT TTTTTGCTGC TCTAGCAGAT GAATTTGTGC AACTGGCCTA ATTTTaatac aggatccaac acataatagg 004960 004961 tatgtaataa ttgttgaata gatggatAAT TCTTTAACCC TGTAATGAAG TGTCCTCATT CAACATGCAT TTATTAAGCC 005040 005041 ACTCTTTGGG TGTGTACAAG TGTGTATCct caaaggcttc ttcctgcaat aacattctat aattctgtga CCTATATTCT 005120 005121 GAGTAAGTCA TATGCTGATT CTTTGATTAA TCTGGGGGAA GGAAGTTTCA AGTTAGCCAA GTTAAAACAC ACATACACGC 005200 005201 TACACTCCAA ACCTACACAA ACCTACTTCT TAAATGATAG AAAGCGGAGG ACCTTGGTAG CTGCATAGCT AAAACCACAG 005280 005281 AATTTTGCCT GGTTTGGCCT GGCCTTGTTG GAAGTGCACA GAGCCTACTC TAGATCCCAT AGCTCAGTCT TTTGAAGTTC 005360 005361 TTCTTTTGTT CCTTGCCTCC TCTTCTTTCT GATCTTTCCA TTCAGGGGTG GTCATCTTCC ACATTCTCAG TTTCTGAAAG 005440 005441 CCCCCTGTTC TCCTAGTCAC CCCTGTCTTT TCCCATCTTA AAAATAACAA AGGCTGTGTG TCATTCATAT GTGCGGATTG 005520 005521 ATCTGCACAT GTGGATGAAT TTGATTTAGA Gatccttgca tgttattgga aggtaacaga ctaacagaga ggcgaagaga 005600 005601 ctcccaagat cacacagcta ttgaatagca gCAATCTAGC CCATTGTTCT GATCTGAAAT TGATCTATAA TTCTCAAGTG 005680 005681 AGAGCTACAG ATACAATTCC ACAAGCCTGC CAATTAGGAG ACTTGAGGTG GCCTTGAGGC TGAGTCAAGC CAATCTTTCT 005760 005761 GCCCTTTTGA TAGCTGGTCA CTCCCCTTGG ATCTATACTA TTTGCTTCAG CTTCTAGTGA TTTCTTCTAC TCTGTTTGGG 005840 005841 ATATTCACAC TGTATTAGGA ATTTATAGAC CTGGATGGGC CCACCAGATG TCATCTGCTT TCTGAAGTTC TCAATCACCA 005920 005921 GGCAGAATTC CAGCCCCAGC AATCCTTTGT TCTGAAGGAT ATAGGGAGGC CCTTCAGTAA GAAAATCAGT CTGAATTTCT 006000 006001 GTTTTTCCCT CCAGAATGAC AGTGGCCCCT TCTGTTGGGT TTGCAACATT TACTCTGGAA GCCCCCACTG CACGCTTACC 006080 006081 CTAATCATCT GCAGGTCTTG GCTGAGCATT TAGAGATTCA GAATACCATA TTGGGTACAA CAAGGGTCTC CTGGAGCCAA 006160 006161 AAAGATACAA ACTTTCAATC CCACTGGTTA GGGTTGGAAG GAAGACAAAT ACACAGAAGA TTCTGTTGTT CCGATGAAAG 006240 006241 GGATCTCTGT GTCTGCACAG CGATGACAGG GAATGGTGTT TGGTCTCAAA CAGCACGTTT CTGACCCGAT TGACTTGGAA 006320 006321 GATGGGCTGC TCTTGCATTG CGGCCCATGC CAAGGTCACG GGGACACATG ACCACTGCAG GGAAGGAAGA TCTGTATTCT 006400 006401 CTGGCGAAAA TTCACATGAG TGGGGAAGGA GAGGAGGAGG TGGCATGCAG AGAGAGGGGC CATCCCACTT TGCAAATCCC 006480 006481 TCCTCCAGCT TTGTCACTGC TCCCCACCCC TCAAGTTAGA AGCACCAGCA GCATGGGCCA GACCAGGGCC AGCTGATTCT 006560 006561 GTGGCCTGTT TATACCCTGT AACCAGAGCC TGTTCTCAAA GAGGCTGCCT GACAGCTGCA GATGTAAGGG GATGGACCAA 006640 006641 CACTTCCAGA GATTGAGTGA CGCGTGCTGG TGTCCATCTC AGGGGCAGCT TAGCCTGACA ATCTTCTCAA GCCAGGGGAT 006720 006721 GGGAGTGGGA AAAGGTGGAG CAGGCTACCA GTTAGTGCTC ATGGTGGCGG GACCTTGGAG CCTGCTATTG AGCTTGTGTG 006800 006801 CTCCCTCCAG CCCCTAGTCT GCCAATGGGA TTGCTTTCTT CAGGGTCAAG GCAGGTGAAA GAGGAGTTCT GCATGTTTCA 006880 006881 TTGGTTTATT TTTCCCACTC TTTATCTTTG TCATTACAGA AAACAAAAAG AACACATGAT GAGGCTCTGG GTCAGCCAGG 006960 006961 ATTCTAGATT CTGCTGCCAG ACACATCTTA CAAGGGTAGA GTGCTTGTTT CCTCATCCCA ACCCCAAGCT TCTCCTCAAA 007040 007041 GGTCAGCCTT TCTTTCTTCC CCTCAGCTCT GGGAGGCAGT AGCAGGGACC TCCCTCCACT CAGCCCAGCC TGGACTCCCA 007120 007121 GCCAGGAGGC TGGGGCAGTG AACCCCACCG CTAGGGTCTG GTGAGGCTGA AAATTCTTCA AGCCAGGCCA TCTTACAGGC 007200 007201 CTTTCTACAG CTGTGTCCCG ACCCTCTATG CCTCTGCAAT TTCATATCCT AATCCTTTTG GGTCAGGCTC CCTCCACCTT 007280 007281 CATCTTTCTT TTGTGTCTTT CATAAATTGG TCCTGTAGCA GCTGCTCCTG CCCCTGCCCA GCCCCCAGTC GTGGGTGCCC 007360 007361 TGGAGAGTGG GTATACATCG TATCCTGG |
Predicted Small Protein
Name | NONHSAT076830_smProtein_3185:3472 |
Length | 96 |
Molecular weight | 10559.929 |
Aromaticity | 0.115789473684 |
Instability index | 52.3536842105 |
Isoelectric point | 9.21514892578 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0453236041471 |
Amino acid sequence | MAPHSDLRGFGQRNCSQECELGGSYYFMVPRYPLCKVRVTTTTSKPNYQSTKKNVFSQLQ NAPQPEKWASDSWRGPSACGVFLCVAGFTVSRGCL |
Secondary structure | LLLLLLLLLLLLLLLLLEEELLLEEEEEELLLLEEEEEEEEELLLLLLLLLHHHHHHHHL LLLLLLLLLLLLLLLLLLEEEEEEEELEEEELLLL |
PRMN | - |
PiMo | - |