NONHSAT077900
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077900 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2139 nt |
Genomic location |
chr2+:242157709..242164792 |
Exon number |
3 |
Exons |
242157709..242157796,242162601..242163370,242163512..242164792 |
Genome context |
|
Sequence |
000001 CCCGCGCCCA CGACCTGCGC GGCTTCCTCA ACTTCACGCT GGCGCGAGCC CCGTCCTCCT TCGCCGCCGC GCACAACCGC 000080
000081 ACGTGCAGGT ATCGGGCTTT CCGGGATGAC GATGGACATT ATTCCCAGAC CTACTGGAAT CTTCTTGCCA TCCGCCTGGC 000160 000161 CTTCGTCATT GTGTTTGAGG TAGCCGAGGC ACCTGCTGGT TCTCCCATCC ATGGCATGAG GCCCCGACCC TGTGCTTTGC 000240 000241 CTAATTCGAG CACGTGGTGA GGGGTCGGTG CCGTCACTTC CTGCTGTGTC ATCTTGGTCA AATCAGAGCT CTTCTCTGCA 000320 000321 CCTGCGTTTT CCCTGCCTGG CCTCATCCCT GGGTTGTGGT GTGGACATTG TGGGTGTCTC CACAGGAGCC CCAGGGCCAC 000400 000401 GAAAGCTGGG GTGGCCTCTG CCCCTTCTGG GGTTCCTTTT CCTGCACAGC TGCTTTCTGA CTCCACCCAC AGCTGGGAGC 000480 000481 AGGTGCCGGA GCCCCGGCCT GCCTGGCCCT GTGAAGGCCA CTCTGGGCGT TTGGGTGGGC GTGAGTGCCT TCCTCTGCTC 000560 000561 CCAGCATGTG GTTTTCTCCG TTGGCCGCCT CCTGGACCTC CTGGTGCCTG ACATCCCAGA GTCTGTGGAG ATCAAAGTGA 000640 000641 AGCGGGAGTA CTACCTGGCT AAGCAGGCAC TGGCTGAGAA TGAGGTGAAC TGTACAGCCC AGTCTCGGCC CTCCCCCCAG 000720 000721 CCCTCTCCCT ATCCTTGTCA GTGGCTGCTC TACCTCCGGA CACTGAGTCA CATCCCTCTT CCTCTTGCTG CCCTTTTTTG 000800 000801 GGGACAGGTT CTTTTTGGAA CGAACGGAAC AAAGGATGAG CAGCCCGAGG GCTCAGAGCT CAGCTCCCAC TGGACACCCT 000880 000881 TCACGGTTCC CAAGGCCAGC CAGCTGCAGC AGTGACGCCT GGAAGGACAT CTGGTGGTCC TTAGGGGAGT GGCCCCTCCT 000960 000961 GAGCCCTGCG AGCAGCGTCC TTTTCCTCTT CCCTCAGGCA GCGGCTGTGT GAACCGCTGG CTGCTGTTGT GCCTCATCTC 001040 001041 TGGGCACATT GCCTGCTTCC CCCCAGCGCC GGCTTCTCTC CTCAGAGCGC CTGTCACTCC ATCCCCGGCA GGGAGGGACC 001120 001121 GTCAGCTCAC AAGGCCCTCT TTGTTTCCTG CTCCCAGACA TAAGCCCAAG GGGCCCCTGC ACCCAAGGGA CCCTGTCCCT 001200 001201 CGGTGGCCTC CCCAGGCCCC TGGACACGAC AGTTCTCCTC AGGCAGGTGG GCTTTGTGGT CCTCGCCGCC CCTGGCCACA 001280 001281 TCGCCCTCTC CTCTTACACC TGGTGACCTT CGAATGTTTC AGAGCGCAGG GCCGTTCTCC CTCGTGTCCT CTGGACCCAC 001360 001361 CCGCCCCTTC CTGCCCTGTT TGCGCAGGGA CATCACCCAC ATGCCCCAGC TCTCGGACCC TGCAGCTCTG TGTCCCAGGC 001440 001441 CACAGCAAAG GTCTGTTGAA CCCCTCCCTC CATTCCCAGT TATCTGGGTC CTCTGGATTC TTCTGTTTCT TGAATCAGGC 001520 001521 TCTGCTTTCC CCCTAGCCAC TACAGGCAGC CTCTGACAGT GCCGCTTTAC TTGCATTCTG CAGCAATTAC ATGTGTCCTT 001600 001601 TTGATCCTTG CCCAACTTCC CTCCCTCTCC CAGCTCCTGG CCCCTGGCCC AGGGCCCCTC TTGCTGTTTT TACCTCTGTT 001680 001681 CCTTGGGGCC TAGTACCCAG CAAGCACCCA AATGGGGGAG GTTTTGGGAT GAGAGGAGGA AACGTGTATA CCTGTAACAT 001760 001761 CTGGTGGCTC TTCCCCCAGA AGTTTGTGTT CATACATAAT TGTTTTCCAC GCTGGATCAT AATGTGACGT GCAGTTCTGC 001840 001841 CCTGTGCTGG GGAGCCACAT GAAGCTTCCC CTGGCTAACT TGCTACCCCG CAGCAATCCC AGTGTGGCCG TCTGCTTGCT 001920 001921 AAAAAATGGA TCTGTGCTCA TCTGTATTGA TGTCCTTGGA GTTCTACAAG TGGAACTTAA GTGTCAAAAA GAATATGTGG 002000 002001 TTTTTAgctg agcgtggtgg ctcacacctg taatcccagg actttgggag gctgaggcag gaggattaca aggtcaggag 002080 002081 ttcgggacta gcctgtccaa catggtgaaa ccctgtcttt actaaaaatg caaaaatta |
Predicted Small Protein
Name | NONHSAT077900_smProtein_1313:1555 |
Length | 81 |
Molecular weight | 8789.2347 |
Aromaticity | 0.1 |
Instability index | 85.43 |
Isoelectric point | 7.85992431641 |
Runs | 7 |
Runs residual | 0.0513157894737 |
Runs probability | 0.0537259949024 |
Amino acid sequence | MFQSAGPFSLVSSGPTRPFLPCLRRDITHMPQLSDPAALCPRPQQRSVEPLPPFPVIWVL WILLFLESGSAFPLATTGSL |
Secondary structure | LLLLLLLEEEELLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHH HHHHHHHLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH HHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTT TTTTTTTTTToooooooooo |