NONHSAT078005

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT078005

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5627 nt

Genomic location

chr2+:242844704..242850330

Exon number

1

Exons

242844704..242850330

Genome context

Sequence
000001 GAGCCTTCCC CGTGTGCGGC ATCACCCAGC TCTGTCCTTC GTGCCTCCCG GGAGCCCAGG GAGTCGGGGC CACCGGACGC 000080
000081 TGGACCTGAG AACCTGGACC CAGGCCCGGT CTGCCCGGGA GTTGGCAAGT GCTGAGCACT GTGTCCCCTT GCACGGCCAC 000160
000161 TCGGGGCCTC CACGCACCTA AAGGACAGCT CCTGAAGCAT CCTGGCCCTG CACTCACGGT GGCACGCGGG CGCCGTCCCC 000240
000241 GAGCCCAGGG GCCAGGCCCA GGGCCCTTCC CCGAAATCTG CCATGAAGGT GAACTCGGTT ACACTCAGGC CCAGGGCTCC 000320
000321 CGAGGCTGGT GGCGGCTGCT CCGCATGAGG CCTGCTGGCT CCCAGGGGCC GCCCTCCCTT GAGAAGGGGG TGCCCACTAC 000400
000401 GGCTGGGCCA TCTGCAAGGG GCCCGGTGAT CACATTATGG AGTCATTTTT GAACTGGGTT CTATTAACTA CTAATTAGTG 000480
000481 AGCCACAGTC ATGACATCCT TTGTAAGGAA AAATGTTCCT AACTGAAGCG CTCGCCCATG TCCGCGGTGA GACGCCTGCA 000560
000561 TGGGGCGGTC TCTGCTTCTC CCCAAGGACC CTCCTCGCCG CCCGCTCGGC TGCACCGGCA GATGGTGGCA GGGGACAAGG 000640
000641 ACGGCGCGGT GGGCCCCGCG CCCAGCTCAC CGCGAGTGCT GCTCCCTTCA CAAAACGCTA GAGAGACCAG CACCCTCCTT 000720
000721 GCCCCGCCCC TGCTTGGGGC CTCTCTGTGC TTGGAGAGGA GGCCCAGGCT TCCTCCTCTT CCTGGAGCGG GCGTGAGGAG 000800
000801 GGGTCTGCAG GCTCTGTCTC CCGGACAGAG CAGCCTGGAA AGTCCCGTGC TCCGGGGACG CCTGTCTTTG ACTCTGTTCT 000880
000881 CCTGGGCCGC AAGGCTGAGG CCCGAGTGCG GAGGCTGCAC CTGCTCAGCT CCACTGTGAC CTCTTGGTGC CGGGGACACG 000960
000961 CCTGCCCCCG CGCACATTGC CGCCCGGCCC ACCTCCTGTC TGAGCCCTCT CAGCAGACAA GGTCCTTGGT GCCTGGAGTC 001040
001041 ATCAGGACAG ATGGTGGAGC CCAAGTCCCT GTGTGGGGAG GGGAGGAGCA AGTCCTAGTG TAGGGAAGGG GTGAGTCCCA 001120
001121 GCGTGGTGAG GGGGTGTCTT TCCCGTCCAT GGTGCCCCGT CGAAGCTCCA CACACTGGAC AGGCCACAAG TTCTCATGGG 001200
001201 ACTCGGGCCC ATGCCTGGCC CAGTGTGGAC GCCCTACTGA AGCGGCATCC CAGGCCCCAG CAGCTCAGAC TCCCCCCAGC 001280
001281 TGCCCTCCCC ATGCCCAGCT TGATGGGTAC ACAGTGTTGC CCGCTAGTGT CCACGCCCTC CCGAGGGGTC CCTGGGCTAC 001360
001361 AGCAATGTTT GGTCTGAGTG AATGAGCCAT GGGGGAACAG ACGCCCCTGT AGCTGCAGAC CCCCTGCCAC AAAGCACAAG 001440
001441 GTGGCAGGGG GTGTCCCAGA AGGCCCCGCA GAGAAGGCAG CTTCGCACCA ACCTCGTGAG GCCTTGGGGG TCAGCAGCTG 001520
001521 GGCCAGGAGC TGACCTGGGA GGCAGGGAGG CAGGGATTAC CTCTGGAGCC ATATCTGGGG CTGGGACTTT GCCTGAGCCA 001600
001601 GGTGTTCTAG GAATGCACTT TAGCTGCAGA GTCCTTATCC ATCTGGCTCA GCGCTGGGGA GGGCAACAGG GAGTGGTGGG 001680
001681 GTCTGTGGCA AAGTGAGGTG CCGCCATGTC CACGGGCGGC TGGTGCTGAG CTCACAGCTG CTCTGGGCAA ACTTTTTCCA 001760
001761 TAGATGCCTC AAATCTGAAT TTTTAGGAAG CATATCCAGA TTTTAAGGTG TTGACTAACT ACTATTTCAC CTAAAAAAAA 001840
001841 GCCACTGAGC CGGCTCCCCC ATGTGGGCCG GACACAGCAT TGTACTAGAA TCCCAGCAGC GAGGGGGATC CCGCACTTCC 001920
001921 TGGGGGCCTG CGGGGGCTGC AGTGGGTGTC TGGGATTCCA GGGTGGGGGC GAAACCCTGC TTTTGAGGAG CCCTCAGATG 002000
002001 GGGGCGGGGA GGGAGCCATT CAGGGACGTC CTCCATCGCA GCAGGCAGGA GCTGAGTGGC TGCTGGGAAG GGTGAAGACA 002080
002081 TTCTCCTCTA CACTCAGGAG GCACACGGGG CTCTCAGATT AGACGGCACC GAGTGGGAAG GTGGTGGTTT CATGATCAAT 002160
002161 TTCCTGACCA GAGCCACCTG CAGAGGAATC TTTTTCCTGA ATACCATATT TTCTAAGCTA TTAGGAGCAC AGCTTGGCAA 002240
002241 TGACTGAGGG TGTCTGGACG GTGAGGTGTG CGCTGGGAAG CCTTGAGGTG CCGTCTGGTC TGGCGTGCCC CAAGGACACA 002320
002321 TGTGGGGAGG GTGCCAGGCC CTGAGTCTGT GGGTGTTGTC AGGAGGTGGC CCCTCTTTTC CTGGTTCTTT GCCTGCTGGT 002400
002401 GCTGGTCTGT GAATGCCCTC GGGGCCTCCT CCTGGAAGAG CCTCTTCCCT GGGCCCGCTG AGCTGCAGAG GCTGCAGGTG 002480
002481 CGTCTCTGCA TGTGGCTGCG CTTTGTGGGC TGTGTCCTTT CTCCTGCTGG CTGGGATTGG CTGCTGAGGC GCCAATCCTT 002560
002561 CCTCTGCCCA GATGTGGCTT GGTTCCGTTG GAGTCCAGTG TCAGAGGGCT GAGTTGGATG TTTCTAGATC AGCTGTGTCC 002640
002641 ACAGGGGCAC TGGCCTCCTC GTCACAGTCC CTTCCCCGGG CCCGTCACTG GTGCTGGGCA CCACACTTAG GCCTGGCCGT 002720
002721 CCTCTGCCCA GGAGAAAAGG GGGAGTGGGT GCTGGGAGTG TGCACAGGTG TGTGTGCAGG GCTGTGGGTG TGCGCACACC 002800
002801 TGCGTGTTTA ATCATAATAC AAAGTGGGCC GGGAACCTCA CCCTGAAGTG TGAAGGGCAG TGCGTCATTT AGAATCCTTC 002880
002881 TCTTTTTCTC CTTCTTGAGC AGCTGAACGT TGAGAGGGGC CCCGTCTGGT GTGGCCGTGT CTGGTCCCCC ATGCAGGCCC 002960
002961 TGCACCGTGG ACTCCCAACC TGCGGGGATC CGTCCCCAAA GACGCCACTA GTTCTGCCAG CCCAGGGTTT CCTGAGTGTT 003040
003041 TCCCGAGAGG CCCTGGTTGC ACGGAGTAAG TTCTAGTTTA GTCCTGGTTC GTTCTCCCCA AACGTCTCTC AGGAGCTGTG 003120
003121 TTTCTTCTTC ATGACCTTCC CCTTAGACCT GTGTCAGATC AGGGTTAGAG GTTGGTCTCC TGGCCTGTGT GGCCACCCTG 003200
003201 GCGCCCTCGA CGCTCTGCCA TGGGCTCCCT TTCTTTCATC GGAGGCAGCA TCTGGCCATA GTGAAACTGA GTGTGGGGAG 003280
003281 GGGGACGCAG AGCTCCCAGG TCCCAGCCCA CAGGTGCCTC GGTGGTGAAA TCCCCTGACA CACTGAGTGG GGCTTCCAGG 003360
003361 ACGGGGGACG GAAGGAAAAG GATTAAGGGG TTAGGTAAGT GCAAATATGG CTTTGAAGGT TTAAAATCCT TCACTCATGT 003440
003441 TGTGAGGGAA GAACAGGTAC TAGACTAGAA GCCATGTCTG GTTGCCCTTG AGGGACCCCT CAGCCAATGT GAAGACGTGT 003520
003521 CCAGGCAGCC CTGGGAGACA TCCCTGTGGG GGGGCCAGTG CAGGAAACGG ACCGCCGGGG GAAGCTCCTG TCATCCCAGG 003600
003601 GTGGGCCAGG CTGGGACTAC AGTCATGTGC ACAGCATGGC TGAGATAATG AGCAAGACTC CAAGGTCCAC CCAGGGGCCC 003680
003681 GATGGCCTTT AGGGAGACCT AGCACtgttg caggatcagg aggaccggag agagaccttg gagtgtacac aggaggatat 003760
003761 ctttatcatt gagtgcactc agacccagca gactcaatgt ccaaagactg ggcccagaac aaagacagcg cctgactttt 003840
003841 acacacactt cacaaaaggg ggtgggctag cttgaagcaa gcttacagtg gcgtgaaagc agggatacag aggcaggaca 003920
003921 aactcaggat tgcacatgac tgttgccaag caacccacat gtccgttatc taggttaacc tgggcacggg cttatcccat 004000
004001 aaccttcact atgttgccca ggtggccgta actcaggcct gctcagaggc tcatgacctt cactttactg cttagataaa 004080
004081 acaatgcttg aagtcaatag ttacagagaa caggaattta taaactcatt ccataaaaca aaggaaaatt tgtttttctt 004160
004161 ctccctatat tgagggagtg ctgggagagt ctccagagca cattagataa tattattatt aagacttttc ctgggtttgg 004240
004241 gctgtgcttg ttgctgcctc taggacaagt tagcctaata cgggaaagct tatttctctt tctttttaat tttatttttc 004320
004321 tttaatttcc cacctcaACA CGACCTGAAC GTGGCTTAGT CTGCTGCTGG TGTTTGTGGA gggctgaata gtgtccttag 004400
004401 gaaatatgtt caagccctaa cctgtgaaca cagacatttt tggaaatggg ttattgcaga tgttatgcat taggatgacc 004480
004481 tcatgatgga ttagggtggg ccctaaatcc aatgaccagc atgcttttaa gaaggggaaa tgtgtgcaca gacacacagg 004560
004561 gaaggtacgg tgaagccgga gggagagaag aagggacgcg tctacactcc aagTGCAGAG AGAAaaggtt cagggttgag 004640
004641 gctcctgaaa caagacggat tcaccagaga aaagcgaaca aatgtatttt agttttatgt gacttggagc cttcgtaagg 004720
004721 aaatgaagac ccagagccag gtggacctgt gtgtttgtgc tttggcttga tgaagagggg atggccgtgg ggaaacgtgg 004800
004801 atgaggacgg gaggctgtga tgtgatgggt gaactgggca cctcagcacg gcctgtgtgC CCGGGGgaga ggggataggt 004880
004881 gagcagggaa atgactgtgt tgactataca cagccaccac ctaaacctca gtgtttgctt tgtaattgag ctcacgcaag 004960
004961 caaagctatc tccagcgggg actctcttct aaagagcacg cacactttaa tttttacctg tcctcgaacc aaccctttgt 005040
005041 tcattataac agtgaaaaag atacccctgg gtggagatgt aagatgctaa tgagacacac cacctacaaa caagcatgtg 005120
005121 tgccgacgac caccagactg tgcttcctga taacacctct cccactttct ttttttttta aggtggggtc tagatctatc 005200
005201 cccagtctgg agtgcagtgg tgagatctca gctcaccaca gcctctgcct cccaggttca agcgattctc ctgcctcagc 005280
005281 ctcctgagta gctgggatta taggcatgcg ccaccatgcc cagctaattt tgtatttttt tttagtagag acgaggtttc 005360
005361 tccatgttgg tcaggctggt cttgaactcc cgacctcaga tgatccactc gccttggcct cccaaagtgc tgagattaca 005440
005441 ggcatgagcc cccatgcccg gctacctctc ccatcttctt atggatcatc gggtgagact cccataaagg cagcctccct 005520
005521 atggccggtc tctgctgtct caccctcatg acccaccctg agtcctttct cccttagggt ggcctgtcta ttctgcacct 005600
005601 cactttcaaa atactctttt ttttttt
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Predicted Small Protein

Name NONHSAT078005_smProtein_1148:1384
Length 79
Molecular weight 8267.2331
Aromaticity 0.0769230769231
Instability index 59.2282051282
Isoelectric point 7.80938720703
Runs 11
Runs residual 0.0073483427142
Runs probability 0.0214385508503
Amino acid sequence MVPRRSSTHWTGHKFSWDSGPCLAQCGRPTEAASQAPAAQTPPSCPPHAQLDGYTVLPAS
VHALPRGPWATAMFGLSE
Secondary structure LLLLLLLLLLLLLEELLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLEEELLL
EELLLLLLEEEEEELLLL
PRMN -
PiMo -