NONHSAT079330
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079330 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3107 nt |
Genomic location |
chr20+:30588084..30591190 |
Exon number |
1 |
Exons |
30588084..30591190 |
Genome context |
|
Sequence |
000001 GTTTTTCTTT CTGTGACACA GTCTACCTCA GCCAGTCTCT CCCCTAGCAG AACTGACCCC CCTGGTCCTC TGCCTCCTGT 000080
000081 CCCCTGACCC CCACCCCAGT CTGGATGTTC AGTCCTTCCC TGTCCTTCCC ACCCTGCCAG GGTCCTTGCA GCCCAGAGGG 000160 000161 TCCCTGAGGG TTCCTTAAGC CACCTGCCCT CCACATCCAT TAGACAGGAG AAAGTGAGAC CCAGAGAGGA CCAAGGACTC 000240 000241 ACCAAAGGCC ACACAGGAAG TCAGTGGCAG TTAGGATTTC CCTGGGGATG AGAGGTAGTT GGGTGTGTCT TAATTTTGCC 000320 000321 AGGAACAGAA GAGAACAGGA TGCTTTGGGT ACCAAATATG GCAGGCCCTG CCCTCAGTTA CCTCTAACCC CAGGAGACCA 000400 000401 GTGTCCCCAT CTCCAGGGCA GACTTCTGTC TACCTGTTTT CTTAGAACTG ACCCCCACGC TGTTGACTGT GTTCCCCAAA 000480 000481 CCTCTGCAGG CACCACACAC ACCCACATCA CGGCGCCTCC TGGCACTGAT GTGCCATGTG CCTTGTAACT GTCACCCCAG 000560 000561 CTGAACAGCA CAGACCTCCC CACTCCCCCA CACAGGGCTC CCCAATGAGG GAGCCTTGCT TGATCCCCTC CTGTCATCTG 000640 000641 CCTCATTCTT GTGTCTCCCC CAAATCTGCC TTACCCCCAG CCAGCTCCCT GCTACACCTG TGTCCCACAG AGGCATGTCA 000720 000721 CCCATGAGAG TCGGGAAAGA CAGAGGGCAG GGAAGGTGAG GCCTGGGGAA AGTCCAGGCC TCTGGATAAG GGCTGAGGGA 000800 000801 GCTGGGAATA TCCAGGGAAG GTCTCGCTTG CAGTCAACAC CCTCCTAAGT ACTCGAGTTC TGCAGGTTCT TCCCTTGGAA 000880 000881 TTAATCTGGA CCTGGAGTCC ACAGAAGCCT CAGACAATAG GGAGAAGGTT TTCTGGGACG AAGGCTGCAT GGGATGCAAA 000960 000961 CTCAAATGCC TCGAGATAAT GAAACTAAGA GTAATGGAGA CAATAGGGAG TGTTGGGGAC TCTGGCAGAC AGGAGAGTGA 001040 001041 GTGTGTGCCC TGCCTGTAGG TACTAAAATT CAAATGTTTG GGAAACTGCT GGCCACTCAT ATTTGGCCCA CGTGCCACCA 001120 001121 GTTTGAGACT TACGGTTCAA AATGTTGAGA AGGTTCTGGA GTGTCCTGCC AAGTGGAAAC CCCTCTGCGG AAGTCAGGGA 001200 001201 CAGAGGCTGT GGCTCCCTCT GAGACTTTGC TAGTCCAACC CTAAATCCCC ATCACCTGGC TATCTGAGAA CTGAGCCCAC 001280 001281 TGCCCTCTCA GCTGAAAAGG GAAATCTGGG GGGTCCACAG GGTCCCTGGT TTGGGAATCA TCTGATAAGG GCTACAGGCC 001360 001361 CCTCCAGTGC CTCATGGGGT TAGAGGCTGC TGGAGTCTTC TCCAGCTTGG GGGCCCCTGG TTAGGAGGAA TCTACATTGG 001440 001441 GTTGCAGGGG AGTCCAGGTG CAGGATGTGG ACTGAAAGCC AGGACCCAAG AGTCCCATTC TGTGCTGGCC CCTGCCACCT 001520 001521 TTGGCACCTG TCTCCCTCCC AGTTCAAGCT GTGGTGGGGC CTGCAGTAGA GGTTGGTAGG GGGAGCTGTA GTTTCTATAT 001600 001601 TAAAGTGCTT TGCAGTGTCT CAATGGAAGG GAACAAGTGG GTGTCAAGCC GCATGGGCAG TAGTAGGGTT GGGGTTTGAG 001680 001681 CCCCCTTCCC AACCATAGAG GCTTCTGAGA CCTGGGGCTG GGGAGGAAAG GAGCTTCAAT GTGCCATTCT GGTTGGGGAG 001760 001761 AGGATAGGAC ATTTCTGGGT CCTTGGCTGC TGCCGGTAGA GGTATGGGGA GGAAAAACTC TAGAGTGGGA GATGTGGAAG 001840 001841 TGGAAAAGGA AGGCCCTGTC CAGGCCTGGC CTGGTTTCTG GAGACAGAAA ACTCCCCAGG GGACAGAGAG GTTACCCCCT 001920 001921 TGTGCTTAGC TTCTGCCACC CTTCCCTTCT CTGGAGGAGA AGGCTGCCCT CTCCTCAGCA ACCCTGGCCT TTATTCTATG 002000 002001 CATAACCACT GCAAGGGCAC CCCTGGCCAG GCTGAATGGG TGGGGGTCCC AGGGCACCTG CAATAATCTC AGAATGGAGG 002080 002081 GTATCCTGGG ACAAAGAGGG GGTACAGAAG GTGCCAGGGG GGAAAAGGTG ATTCCTCCAT CTCCCTCTCA CCCAAATCCC 002160 002161 CCCAGATCGA ATCTGACCCT TTTCCCTGGT CTCCATTGTG CTAAACCACC GAACTTGGAG GAGCCTCATA TAAACACAGC 002240 002241 CCCCAGCCCC ACTGGCTTTC CGAACCCATC ATGAAATAGC TGGAAGGTAT CTGAACCGTT CCCATAGCTC CCTCATTATT 002320 002321 TTCTTCCCTG AGGATCCTGT GGTTTAGGAG ATTTTTCTCC CAAACCAGCC TCATTTCTTG AAGAAGAATT CATTTTCCCA 002400 002401 TATTAAATTA ACTCAAGCTG AGCTTCTGAT TGCAGATAAA TGTTTCTAAG GCCTCAAGTC AACTTCTAGG GCTTGAAGGT 002480 002481 GGGGGAATAT ATGTATTTTA TTGAGTTGCT TAATACAAAA TTCTCAAAAG CACTTGTGGG CACTCATTCC TGCCTTCACA 002560 002561 GGCCCTCAGG GTCTGGGACC CCACGTTGGG AATCAATGGT TTAGACATCC AGCATCCTAT TTTACTGAAG GGGCAAGCCC 002640 002641 AGAGATGGGA GATGGCCAGC CCAAGGTCAC ACAGCAAGTT GGTGGCAGGG TGAGACCAGA ACCCGGTTCT TTTGAGGGTC 002720 002721 CCACCAGAAT ATCCCCAGCC CTGATCCTCC CCTCCATGCC CCTGGAACTC TAGGAATCAC TAGCCATGCC TGAGGGGCTA 002800 002801 ATCTCCCTCT GTCAGCACAG TTCCGAGTGA TTCTTCCCCT CCCTGTCGTC TCTTCCTCCC TAACGGGCCC TCACCCCTGT 002880 002881 CCTCTTCTGT TTCCTTTTCC TGGTCCCACC TCCTGGTATT TACTACATCT GTGCCATCCC TCATCCCCCT GACCCCCATT 002960 002961 CACCCTCCGA GCTTCCCCCA GGAGGGGGAG GGGGAGGGGG CCCCGAGCTG GGGCCTCTTT ACTGAGACTC TTTTGTACAC 003040 003041 CACAAACTTT TTGTATATTT TTAATTTTGC TGCGACATGA GATATTAAAA GTCATTTCAG TACGTGC |
Predicted Small Protein
Name | NONHSAT079330_smProtein_287:547 |
Length | 87 |
Molecular weight | 9352.5804 |
Aromaticity | 0.046511627907 |
Instability index | 43.5534883721 |
Isoelectric point | 8.31317138672 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0411293646588 |
Amino acid sequence | MRGSWVCLNFARNRREQDALGTKYGRPCPQLPLTPGDQCPHLQGRLLSTCFLRTDPHAVD CVPQTSAGTTHTHITAPPGTDVPCAL |
Secondary structure | LLLEEEEELLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLLLL LLLLLLLLLLEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |