NONHSAT080011
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080011 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2510 nt |
Genomic location |
chr20-:44978167..44981836 |
Exon number |
2 |
Exons |
44978167..44979529,44980690..44981836 |
Genome context |
|
Sequence |
000001 attttatcag taaggaaact gaggtccaga aaggggacac atctcagccc aagtcccaca gctctgtact agcaagacct 000080
000081 agattaaaaT GAACGTTTGT AGGGATAGAA TTTTGTCCCT GTTTGTAGGT GAACTGGCTG AAATGTAGAC CAAGGAGTTC 000160 000161 CCTGAGTGGG CTGGGGCACT GTTGGTCCTT CGTCACTTGG TAGCCGCCCT ACCTTCTTTA GCCCAGTAGT TACCACAGCT 000240 000241 CCAAAGACCC CATGAAGTCA GCAGCCATGA GCCCCTCCCC ACAGACCAGT AAGGGAATAC TGTCCAAAGG TGCAGGGCAC 000320 000321 TTCCATCCGT CTTTCCATGC AGGGCCACCC CCCTCTACTT CACCCCAGAG GCTCAGACGA GCCCTCCCCA TCATTCCGCT 000400 000401 AGGATCCCCA TCATCCCACT AGGATCTCCA TCATCCCGCT AGGATCTCCT TCATCCCACT GGGATCTCCT TCATCCCGCT 000480 000481 AGGATCCCAT CATCATCCCA CTAGGATCCC CATCATTCCA CTAGGATCCC ATCGTCATCC CGCTAGGATC CCATCGTCAT 000560 000561 CCCGCTAGGA TCCCATCGTC ATCCCGCTAG GATCCCATCA TCATCCCGCT AGGATCCCAT CATCCCGCTA GGATCCCCAT 000640 000641 CATCCCGCTA GGATCCCATC ATCCTGCTAG GATCCCCATC ATCCCGCTAG GGTCCCATCA TCCCGCTAGG ATCCGCATCA 000720 000721 TCCTGCTAGG ATCTGGCTTG TATTGCCCCC AGGCGCTCTG GCAGCCATCA CTGCTTCCCT GGTTTCCCCA GGTCTCAGGC 000800 000801 CATCTGTGTG GGATCACTTT ATACCTTCCA TGCTTTTTCT CTGGGCTGCA GACAGTTAGC AGGTCTCAGT AAGAACTCAC 000880 000881 TACTACAGTG GAAGATCTTG TGTGGTTGGC ATTGGGCTGG CCAAGGCAGC CCAGGACCCG GCCTCCCACT CTCTCTCCCT 000960 000961 GTTGCTTTCA GGTCTCCATT TGTCCACATC TGAGAAAATC TTCCGTTTCC AGGACACAGG GCTGCTCCTG CGGGTACTTG 001040 001041 GGAGCCTCTT CCTTGGCGGG ATTCTCGCCT TTGGTTTGGG CTTCTCTGAG TTCCTCCTGG TCTCCAGAAC CTCCAGCCTC 001120 001121 ACTCTCTCCA TTGCCGGCAT TTTTAAGGAA GTCTGCACTT TGCTGTTGGC AGCTCATCTG CTGGGCGATC AGATCAGCCT 001200 001201 CCTGAACTGG CTGGGCTTCG CCCTCTGCCT CTCGGGAATA TCCCTCCACG TTGCCCTCAA AGCCCTGCAT TCCAGAGGTA 001280 001281 ACCCAGAGTC CCTTCCAGAA GCCTCTGTTT TCTGTTCTTC TCCCTGTGAC TCTTAGTGAT TCTGATGCAG GAAGTGTGCC 001360 001361 CGGTGGCTCT GCTGCCGTCA CTCCTCTAGG AAGATGTGGG GGTCATCTCC AGAGTGGGTG GGTGGGGCCT GGGTGACTCA 001440 001441 GCACACATGC AAATCAGAGC AAACCAAGAA AACCACGACT GGGCCTGTAA CTGTGGTCTC TCTCTATCCC AAGGTGATGG 001520 001521 TGGCCCCAAG GCCTTGAAGG GGCTGGGCTC CAGCCCCGAC CTGGAGCTGC TGCTCCGGAG CAGCCAGCGG GAGGAAGGTG 001600 001601 ACAATGAGGA GGAGGAGTAC TTTGTGGCCC AGGGGCAGCA GTGACCAGCC AGGGCAAATG GCTTAGAAGC AGGCCACTCC 001680 001681 CCAGCCTGCT GCCAGCACTC ACTGTGCTCA AGCCGCCAGG GCTCATCATG GTAGCTGGGA GCTGTGGACG GGAGTCACCA 001760 001761 GGTGGTGGGG CCAAGCCAGG GACTCATGAC TTTTGCCCCT CCCTTCAGAG CCTGGTCACA CAAGGGGCGA GCACCAGGCC 001840 001841 AGCCTGGGAC TGGCCAGAGC TGGGCCCAAG CTGCGCTGGA ATCGCAGCAG GAGAGGGGAG TGGGCTGGTT CTTCCCACCA 001920 001921 CTTCCCAGGC TCTGACAGCC GAGACTCATT TCCAAGGCAC AGCAGCTTTC TAAAGGGACT GAGTTTGGAC TGGGTTTTGG 002000 002001 ACCTCCAGGG GCTGGAGCTT CATCACCTGG GCAGTGTCTT TTCTCAGAGA GCAGGTTTCT TTATAGTTTG GAAATAAATG 002080 002081 GTTCACGGTC CACTGGCCGC CTTGTGTTGC TGGAGACGTG GGGGCAGGGA GGGGACAGTG TGGGCCTGGC CTCTCCTTTC 002160 002161 CTTTCCCTGC CTGGAGCCTT CTTCAAATGT CTGGTCTTAA GCCAGGCCTC CTTCATTTTC TCGCTCCTGT TAGAACACCA 002240 002241 GTCCCCTCCC CAGTGGGGCC CCACTGCACC TGCTGGCAGG AAATAAATGA ATGTTTACTG AGTACTGCAT TCTGGAGACC 002320 002321 TTACATGTTT TCacagccta gtttgaatac tggctttgtc actagctgtg tgaccctaag caaatgacct aacctgtctg 002400 002401 tgccgtagtt ttttaatctg tgaaatgggg ataatgtcta tctcagagtc cttttgaaga ttgagtcatt attagtaaca 002480 002481 gattaaatgt tATATAAGCA TTTCTTTTAA |
Predicted Small Protein
Name | NONHSAT080011_smProtein_1727:1972 |
Length | 82 |
Molecular weight | 8044.8271 |
Aromaticity | 0.0617283950617 |
Instability index | 45.7222222222 |
Isoelectric point | 4.96673583984 |
Runs | 9 |
Runs residual | 0.03106859619 |
Runs probability | 0.0266933600267 |
Amino acid sequence | MVAGSCGRESPGGGAKPGTHDFCPSLQSLVTQGASTRPAWDWPELGPSCAGIAAGEGSGL VLPTTSQALTAETHFQGTAAF |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLEEELLLLLLE EELLLLLLLLEEELLLLLLLL |
PRMN | - |
PiMo | - |