NONHSAT080147

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT080147

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4418 nt

Genomic location

chr20+:47099574..47133397

Exon number

3

Exons

47099574..47099732,47100198..47100241,47129183..47133397

Genome context

Sequence
000001 GTCAGTTGGG GATCAGAGGC CACACTCATC GTAGCAGAGA GGCAGGAACA GCTGGGCGAG GGTCCTTCTG TGACATCTAC 000080
000081 TGCATCACTG GGCTCTGTGA AGTGACTCAG CTGCCAGAAC TCACACAATA TTCTGCACCA AAACCTCACG GGAAAAATGC 000160
000161 ATCACGAACC TCAGACTTAA ACAGCACAAC AGGctcctcc cagGTCTCCA GTTCCACAAC CCTCAAACTA CACAGCAGCA 000240
000241 CCGGCTCCTC CCCAGGTCCA CAGCTCCACC ACCCTCATAC TAGACACCAA GACTACCTCC TCCCTGCTCT CCAGCTACAC 000320
000321 GACCCTCAGT CTTGAACAGC AGCAGCTCCT CTCTGTACCT CAAGCCCCAC GAccctcaga cttgaacaag aacaacacca 000400
000401 tctcccccca gggctccagc tcggggacct acagatttaa acagcagcac cggctcttcc tgtgatctcc agctccacta 000480
000481 acctcaaact agaatagcag caccggctcc tctttgggtc tccagcttca ctactgtcag gctggaacag caacaccggt 000560
000561 tcctccctgg gtctccagct caacgactct cagatttgaa aggcagcacc ggctcctcac aaagtttctg gctccaaggc 000640
000641 cctcaaacta gaatagcagc agctgctgca tcttgggtct ccagctccac aacccTCAAA GTAGAAAAGC AGCCCTGGCT 000720
000721 CCTCCCTGCC TCTCCAGCTC CTCAAGTCtg agtgttgtag agctggagac gcagggagga gtcagtgctg ctgttctagt 000800
000801 ttgagggtcg tggatctgga gacccagggt ggagccggtg ctgctgttct agtttgaggg tcatggagct ggaagacccc 000880
000881 gggaggagct gctgctgctg ttctagtgtg agggtcatgg agctggagac ccgggaagga gTCATTTGAA CAGCAGCACT 000960
000961 GGCCCCTCCC CAGGTCTCAG GCTCCACGAC CCTCAGACTT AAAAAGCCGT AGTACGGGCT TCTCCCTGGG TCTCCAGCTC 001040
001041 TACAACCCTC AGACATGAAC AGCAGCACCG GCTCCTCCCC CTGTCTCCCG TTCCATGACC CTCAAACTAC AACAGCAGTA 001120
001121 CCAGCCTCTA CCCAGGTCTC CAGATCCACG ACCCTCAAAA TAGAATGGCA TCACCAGCTC CTCCCTGGGT CTCCAGCTCC 001200
001201 CAAACCCTCA AACTTCAACT GACACAGCAG ATCCTCCCCA CAGTTAAACA GCAGCATGGG CTGTTCCCCA AAACTCCAGA 001280
001281 TCCCTCTGAC TTAAATGGCG GTAGCACCAG ctcctcccca ggtctccagt tccatgaccc tcaaactaca acagcaacac 001360
001361 aggctcctcc ctgaatctcc agctcaacaa CTCTCAGACT TGAGAGGCAG CACCGGCAAC TCCCCAAGGC TCCAGCTCCA 001440
001441 CCACCCTCAG ATTTGAACAA CCGTAGCACG ACctcctgac caggtctcca gcttcatgat ccttaaacta gaacagcagc 001520
001521 accgctgcct ccctgggttt ccagctccac gaCCTTAAGA CACGAATGGC AGAACTGGCT CCCCACCAGG GTTCCAGCTT 001600
001601 CGGGACCTAT AGATTTAAAT GACAGCACCG GCTCTTCCCA GGATCTCCAG CTCCACTCCC CTCAAACTAG AACAGCAGCA 001680
001681 TCAGCTCCTC CCTGGCTCTC CAGCTCCCAA ACCCTCAAAC TTCAACTGAC ACACAGGATC CTCCCCACAG TTAAACAGCA 001760
001761 GCATGGGCTG TTCCCCAAAA CTCCAGATCC ACAACCTTCT GACTTAAATG GCGGTAGCAC TGGTtcctcc ctagatctcc 001840
001841 agttccatga tcctcaaatt acacagcagc actggctcct ccacaggtct ccagctccac caccatcaca ctagaCACCA 001920
001921 AGACTACCTC TGCCCCTCTC TCCAGCTACA CGACCCTCAG ACTTGAACAC CAGCAGCAGC TCCTTCCTGT ACCTCAAGCC 002000
002001 CCATGACCTC GGATTTGAAC AACAACAACA CCAGCTCCTG CCTAGGGCTC CAGCTGCAGA ACCCACAGAT GTAAACGATG 002080
002081 GCACCGGCTC TTCCCAGGAT CTCCAGCGCC ACTACCCTCA AACTAAAACA GCAGCACCAG CTCCTTTCTG GTTCTCCAGT 002160
002161 TCCATAACAC TCAGGCATGA ACAGCAGCAC CCACTCCTCC TTCCGGCTCA AGATTCACTA CCCTCAGACT AGTACAGcaa 002240
002241 aaccggttcc tccctggatc tccagctaaa tgactctcag actggaaagg cagcaccagc tcctccgtgg atctccggct 002320
002321 ccacgacact caaaacaaca cggctcctcc ctgggtctgt acctccatga ccctcaaact acaacaacac tgctcctccc 002400
002401 tggctctgca gctccaccac cctcaaacta gaacaagact tctcctcccc agggtgccag ctaccgaacc ctcaaattac 002480
002481 aacaacattg ctcctccctg ggtctgtagc tccaggaccc tcagaccaga acaagacctc tcctccctga gtctccagct 002560
002561 tccggaccct tgaattacaa caacattgct cctgcctggg tctgcatctc cacaaccctc aaattaaaac aagatctctc 002640
002641 ctccctgggt caccagcttc gtgaccctcg aactaaaaca acaatgctcc tgcctgggtc tgcagctcca cgaccctgaa 002720
002721 actagaacaa gacctctcct ccctgggtca ccagcttcct gaccctcgaa ctacaacaaa attgctcctc cctgatcagc 002800
002801 agctccacca gcctcaaact cgaacaagac ttctcctccc caggttgcca gctaccagac cctcgaatta caacaacatt 002880
002881 gctcctccct gggtctgcag ctccacgacc ctcagaccag aagaagacct ctcctcccct gggtcgccag cttcctgacc 002960
002961 ctcgaattac aaccaaactg ctcctccctg ggtcggcagc tccacgaccc tcaaactcca acaacacttc tcttccctgg 003040
003041 gttgccagct accggaccct tgaattacaa caaaattgct cctccctggg tctgcagctc cacgaccttc acaccagaac 003120
003121 aagacctctc ctccctgggt cgccagcttc cggaccctcc aattacaaca acattgctcc tccctggttc ggcagctcca 003200
003201 cgaccctcaa actagaacaa gacctctcct ccctgggtct ccagcttcca gaccctcgaa ttacaacaaa attgctcctc 003280
003281 catgggtctg cagctccacg accctcaaac tagaacaaga cctctcctcc ctgggtcgcc agcttcctga ccctcgaact 003360
003361 gcaacaaaat tgctcctccc tggtcggcag ctccacgagc ctcaaactcg aacaagactt ctcctcccca ggttgccagc 003440
003441 taccacaccc tcgaattaca acaacattgc tcctccctgg gtctgcagct ccatgaccct cagaccagaa caagacctct 003520
003521 cctccactgg gtcgccagct tcctgatcct cgaattacaa caaaattgct cctccctggg tcggcagctc cacgaccctc 003600
003601 aaactagaac aagacctctc ctccctgggt cgccagcttc ctgaccctca aattacaaca aaattgctcc tccctgggtc 003680
003681 tgtggctcca caaccctcag accagaacaa gatctctctc ctccctgggt ctccagcttc tggaccctca aattacaacc 003760
003761 aaattgctcc tccctgggtc ggcagctcca cgaccctcaa actcgaacaa gacttctcct ccccgggttg ccagctaccg 003840
003841 gaccctcgaa ctacagcaac attgctcctg cctgggtctg cagctccacg aaaatcaaac tagaacaaga cctctcctcc 003920
003921 ctgggtcgcc agctttctga ccctcgaact acagcaatgt tgctcctgcc tgggtctgca ctccacaacc ctcaaactag 004000
004001 aacagcagca ccagctgctt cctggacttc cagctcaatg actcTCACAC TTCAATGGCA GCAATGGCTC CACCCCCAGG 004080
004081 CTCCAGCTCC AACACCCTCA GATCTGAGCA GCGGCAGCAC CAGctccttt ctgggtcttc tgtttcacga tccttaaatt 004160
004161 agaacagcag caccatcttc tccctgggtc tccagctcca cgaaactcaa gctagaatag cagcaccggc tcctctggga 004240
004241 tcttcagctC CACGACCCTA AGACATCAGT GGCAGCACTG GCTCCTCCCC TGGGCTCCAG CTCCAGGACC CTCAAACTTG 004320
004321 AACAGAAACA CCAGCTCCTC CCCAGGCCTC CAGCTCCTTG ACCCTCATAA ACAATCCCTT CTTATGAAAT GTAGCAGTCA 004400
004401 GGAAAACTGT AGAGGAAG
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Predicted Small Protein

Name NONHSAT080147_smProtein_2366:2572
Length 69
Molecular weight 7696.7615
Aromaticity 0.0294117647059
Instability index 79.8338235294
Isoelectric point 8.88629150391
Runs 7
Runs residual 0.037559618442
Runs probability 0.0454866631337
Amino acid sequence MTLKLQQHCSSLALQLHHPQTRTRLLLPRVPATEPSNYNNIAPPWVCSSRTLRPEQDLSS
LSLQLPDP
Secondary structure LLLLHHHHHHHHHHHLLLLLLLEEELLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLL
LLLLLLLL
PRMN -
PiMo -