NONHSAT080467

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT080467

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1429 nt

Genomic location

chr20+:55260400..55261952

Exon number

2

Exons

55260400..55261004,55261129..55261952

Genome context

Sequence
000001 tcgctttgtc gcccaggctg gagtgcagtg gcaccatctc ggctcactgc aacctccacc tcctgggttc acgccattct 000080
000081 cctgcctcag cctcccaagt agctgggact acaggcgccc gccaccacgc ctggctaatt ttttgtattt ttggtagaga 000160
000161 cagggtttca ccgtgctagc caggatgctc tcgatctcct gacattgtga tccacctgcc tccgcctccc aaagtgctgg 000240
000241 gattacaggc gtgagccacc gcgactggcc CGAGACCCTC TTAAAAAAAA AAAGAAAAAA GAAGGAAAAA GGAGCTCAGA 000320
000321 GGATGCGGGG AGAATGTAGA GAGCCGAGGA GAGCTCCAGA GACACAGAGA CAAGAGACCA GCCTCAGAGG CTGACCACCA 000400
000401 GCCTCCTGCT TGCTCCTCAG TTCTCCACTG GTGGAGTCCC TCTCCTTCCT GTCTCTGGCT TCTGGGATAG AGTCCTCTCT 000480
000481 GCTCAGAGAA CCCCCTGGGG GTTTAAGCGC TGCAAATGTG TTTCCTTCTC TTCTGACCAA AGGGTTCTTC TGTACCATCA 000560
000561 CTCAATAACT CCCAACCAGG ATGTGCCTGC CTGGACCCCC ATCGTGCTCC AACCAAAAGC TGGCCCGGGT CCCGACTGCC 000640
000641 CTCTCAGCTG GCAGAGGATG GAGCCATTTG GCTCCGCTTC TGAAGTGGGC GCCACGAGCT CACGCTTGGC TCGTGCTCCT 000720
000721 CACCGATGCT CTCTCTGCTC GGCCTTGCTG AGCCAGGCGG GGTTCTGGCT TCAGTGCTGC GTCTTCTCTC CTCCATGAAC 000800
000801 AGAAATCCCC GAAGGTCAGC GGTCTTGAGT ATAATCGTCT TCAGATATCT GAAGAGCCGG TGTGAACAGC CGTTCAACTC 000880
000881 AATTGCCCCA CTTTTCATCG AGCATTTCCT CTCTGCCTGC ACGACTGAGG TCTTCTCTGA TTTTTTTTAG TAATTCATAT 000960
000961 TGATTTATTT TATAAGTTCT ATTGCTTCTA TTGATAATTT CATTAATTAA TAGAAAATTA AGATGAGGTC ATTTTGGTAG 001040
001041 CACAAATATT GAAATAGAGT TTTGAAAtag tatgatcaac taatttatcg tcgtcaccag gactttttga tagtgaaact 001120
001121 gggctctttt actaattatg tggggaaaac aggtataaac ggagactgtc ccatgcaaac tgaaatatat catcacTATT 001200
001201 GAGAGATGAC TTGCTCAAAC CTTAACATCC CATTTATTTC CGAATTTGTT TTAATGATGG AAACAAGGGA GGGAATCTGA 001280
001281 GTCACACAGG GAGTAGCTGC AAATGGTAAC AGGttttttt tttttatgct tgcctttttt attttttgtt ttgagatgga 001360
001361 gtcttgctct gtcgcccagg ctgcagtgca gtggcgttat ctcagctcac tgcaggctcc gccccccga
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Predicted Small Protein

Name NONHSAT080467_smProtein_725:949
Length 75
Molecular weight 8278.6507
Aromaticity 0.108108108108
Instability index 58.422972973
Isoelectric point 8.88421630859
Runs 8
Runs residual 0.0345418589321
Runs probability 0.0349209503621
Amino acid sequence MLSLLGLAEPGGVLASVLRLLSSMNRNPRRSAVLSIIVFRYLKSRCEQPFNSIAPLFIEH
FLSACTTEVFSDFF
Secondary structure LLLLLLLLLLLLHHHHHHHHHHHHLLLLLLEEEEHHHHHHHHHHHHLLLLLLHHHHHHHH
HHHHHHHHHHHHLL
PRMN -
PiMo -