NONHSAT080467
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080467 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1429 nt |
Genomic location |
chr20+:55260400..55261952 |
Exon number |
2 |
Exons |
55260400..55261004,55261129..55261952 |
Genome context |
|
Sequence |
000001 tcgctttgtc gcccaggctg gagtgcagtg gcaccatctc ggctcactgc aacctccacc tcctgggttc acgccattct 000080
000081 cctgcctcag cctcccaagt agctgggact acaggcgccc gccaccacgc ctggctaatt ttttgtattt ttggtagaga 000160 000161 cagggtttca ccgtgctagc caggatgctc tcgatctcct gacattgtga tccacctgcc tccgcctccc aaagtgctgg 000240 000241 gattacaggc gtgagccacc gcgactggcc CGAGACCCTC TTAAAAAAAA AAAGAAAAAA GAAGGAAAAA GGAGCTCAGA 000320 000321 GGATGCGGGG AGAATGTAGA GAGCCGAGGA GAGCTCCAGA GACACAGAGA CAAGAGACCA GCCTCAGAGG CTGACCACCA 000400 000401 GCCTCCTGCT TGCTCCTCAG TTCTCCACTG GTGGAGTCCC TCTCCTTCCT GTCTCTGGCT TCTGGGATAG AGTCCTCTCT 000480 000481 GCTCAGAGAA CCCCCTGGGG GTTTAAGCGC TGCAAATGTG TTTCCTTCTC TTCTGACCAA AGGGTTCTTC TGTACCATCA 000560 000561 CTCAATAACT CCCAACCAGG ATGTGCCTGC CTGGACCCCC ATCGTGCTCC AACCAAAAGC TGGCCCGGGT CCCGACTGCC 000640 000641 CTCTCAGCTG GCAGAGGATG GAGCCATTTG GCTCCGCTTC TGAAGTGGGC GCCACGAGCT CACGCTTGGC TCGTGCTCCT 000720 000721 CACCGATGCT CTCTCTGCTC GGCCTTGCTG AGCCAGGCGG GGTTCTGGCT TCAGTGCTGC GTCTTCTCTC CTCCATGAAC 000800 000801 AGAAATCCCC GAAGGTCAGC GGTCTTGAGT ATAATCGTCT TCAGATATCT GAAGAGCCGG TGTGAACAGC CGTTCAACTC 000880 000881 AATTGCCCCA CTTTTCATCG AGCATTTCCT CTCTGCCTGC ACGACTGAGG TCTTCTCTGA TTTTTTTTAG TAATTCATAT 000960 000961 TGATTTATTT TATAAGTTCT ATTGCTTCTA TTGATAATTT CATTAATTAA TAGAAAATTA AGATGAGGTC ATTTTGGTAG 001040 001041 CACAAATATT GAAATAGAGT TTTGAAAtag tatgatcaac taatttatcg tcgtcaccag gactttttga tagtgaaact 001120 001121 gggctctttt actaattatg tggggaaaac aggtataaac ggagactgtc ccatgcaaac tgaaatatat catcacTATT 001200 001201 GAGAGATGAC TTGCTCAAAC CTTAACATCC CATTTATTTC CGAATTTGTT TTAATGATGG AAACAAGGGA GGGAATCTGA 001280 001281 GTCACACAGG GAGTAGCTGC AAATGGTAAC AGGttttttt tttttatgct tgcctttttt attttttgtt ttgagatgga 001360 001361 gtcttgctct gtcgcccagg ctgcagtgca gtggcgttat ctcagctcac tgcaggctcc gccccccga |
Predicted Small Protein
Name | NONHSAT080467_smProtein_725:949 |
Length | 75 |
Molecular weight | 8278.6507 |
Aromaticity | 0.108108108108 |
Instability index | 58.422972973 |
Isoelectric point | 8.88421630859 |
Runs | 8 |
Runs residual | 0.0345418589321 |
Runs probability | 0.0349209503621 |
Amino acid sequence | MLSLLGLAEPGGVLASVLRLLSSMNRNPRRSAVLSIIVFRYLKSRCEQPFNSIAPLFIEH FLSACTTEVFSDFF |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHLLLLLLEEEEHHHHHHHHHHHHLLLLLLHHHHHHHH HHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |