NONHSAT081842

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT081842

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

7268 nt

Genomic location

chr21+:35303858..35350075

Exon number

18

Exons

35303858..35304046,35307146..35307376,35308094..35308196,35310529..35310675,35312910..35313329,35315735..35316140,35318114..35318199,35321230..35321793,35334367..35334560,35334602..35334982,35334989..35335067,35336667..35337264,35339401..35339652,35340534..35340763,35341538..35342614,35342764..35342844,35347488..35348086,35348439..35350075

Genome context

Sequence
000001 TCACGCTGGG AGCTGTAGAC CAGAGCTGTT CCTATTCGGC CATCTTGGCT CCTTATTCTC ATTACCTTCT TGAGTTGTGG 000080
000081 CTCAGACACT ACAACAGAGC TCTGTCACCT CTTTCTAAAA GCTGGGAAAT GGTTATTGTC AACGCCAGCC CCATTTTGGA 000160
000161 GGCACCTGGT TGCAGGGGAC CACAGCTAGC CGGTTCAATG GGTCTGTAGG TCCTGAACTG AAAGTGTGAC AGGTTTCTAG 000240
000241 GGTGGGACTG GAGTGAACCA AATATCTTGA TAGGATAAAT TTTGCAGAAA TATTTTATAC AAGTAAAATC AACACTGTGG 000320
000321 ACTCAGCTTT GATGTTTTTA AAAAATTTTT GCATGCTAAA TTAAAAAAAA TTGTATTGCC CCCTGCTTTA TTGAGACATA 000400
000401 ATTGACAAGT AAAATTGAAG GACAACATGG TGAGGAGCAG CAAAGAAGAA ACGAGATACG TGTGGCTGCT TCATTTACTC 000480
000481 ATTCATGATT TTTGGTTAGC CTTTGAAAGT TTATTTTTCA ATACCCGAGT CATCCCTGGA GTCTCACACT TGATCTTAGC 000560
000561 CAAAAGGCCG AGAAGCGATC ATCCCTGGAG TCTCTCTGAA TCTGCCGTGA TCCTGGGGGC TGCCCGATTC GTGCATTGTT 000640
000641 CATTGCTCAA TTAAACTCCT TTAAATTTAA GAAAACGCTG CATAAGCCTC CCGTGGGGTT AAAATAAGAG TAAGAGAAAA 000720
000721 AAACATGACT TCATTGTGTG GGTGCCTGTG TTGAAGATGA TTTAGTAGCT TCTGCCGTGA GGCATTTGCT AGAATAAAAT 000800
000801 CCTTTCTGCC CTCATCATTG TCAGCACACT GGTTCGGGCC TTTAGCACTC CTACCTGGAT CGTGGAACTA AAGAATTTTA 000880
000881 GCAGCTGACA AGGACCTTAA AGATTGTAGC CTAACTCTCT CGCTTGTCAG GGGAGGCAGC TGGTGCCAGG CAGAAGAAGT 000960
000961 GGCATGTTTG GAGTGGCCTG CCTGGTGTCT GAGCCACACC TGACACCCAG TGTTCTTTCC ACTGGGCCTT TATTGCAATT 001040
001041 GTTTTCCTCT CTCTTTAGTC TCTTCCTGCT CCAGTAGGAT TGTACATTCC ATTAGGAGCT TCATCAAGCG TCAGCTTGCC 001120
001121 CACAGTTTGG TTTCCAGGGA GACTGGGAAG TAACAATACA ATAGTTCATC TTCATTATGA GTGTACCATG CCAAGAGCTT 001200
001201 TCCTAAGTGC TTTACATTCA TTATCCTCTT TAATTCTCTT AAGAATTGTA TGAGGTAGGT CCTATTATTA CCTCTATCTT 001280
001281 ACAAGGAAAC TGAGGATCAG ACAAGGATAT CTAGCTTATC CATGATTAGG TAGAGCTGAC AATGGGATTA AATAATCAAG 001360
001361 TCCTGCTACT GCCAGGTTAA GAAAACCCAG CTCTTTGTTG TTTTATAACA ACTGGGGGAA GCTGGTGTGC ATCATTGGCT 001440
001441 GATAGGAAGA GAAATTGAAT TCCACATCTA TGTCCTACTT CATGCATGGA TTGCCTGGGT GCGGTGGCTC AGGACTGTAA 001520
001521 TTCCAGCTAC ATGAGAGGAT TGCCTGAGGC CAGGAGTTTG AGACCAGCCT GAACAACATA AGCAGGCTTC GTGAGCTGGG 001600
001601 GAAGTGCCAG AAGCAGCCTT CGAATTAGAC AGACCTGGAC CCAAACCCTT TCTCTTCCCC CCACCCATTT TGGCATCTTG 001680
001681 GCACGAGACT GTCCCCATTT CTGGAAAGGG TGTTCACAAG AACAGTCTGG CTGGGTTGTT GGGATGACCG AGTGTGATCA 001760
001761 TGCGTCTCTA TGGCTGGCCA TGGTGTTTAT TCGATGGCAG GTATTACCAG GATGGAGCGA GTCCCAGTAG GAAGGGCCTT 001840
001841 TAGGATGTCA TCTGGTTCCA CCCAACAGGG ATGGGAACTG TAATTCCCCA CTCTCCCTGT GGAGAATCAG GGCGGGCTCC 001920
001921 GGATGGATGG CCAAAGGCTG CACAGAGGTG AGCCTCCAGG GTTGGGTTCT AAGCGCTGTT CACACTCCTG TCCCAGTGGT 002000
002001 GTTTGGTCTG GGGCACATTG TGATATGTGT TTCCCTCCTT TCTTAAAATT AGCTCTTGGC TTCAGGGCCT TGTAGTGGAC 002080
002081 TGATGTCCCT CCTTAACTGA ACAGTCAGTC TGCTTATTTT TTTGGGGTGG TTTAGGGGTA AAAAGCGCTC CTGTGAAGAG 002160
002161 GAAGCCTCAG GAGGGAGTGA GAGCAGAAGG GAGCCCACCT GTGGTTGTCT CAGCAACAGC AGAAGAACCT GGGCCGCTGG 002240
002241 GAGTGGAGTT GGAGAGAAAC AGGTTGATTT GGAAGTTCTT CTGCAGGTAG AACGGAAAGG CGAATTCTGC AAGATGCTCT 002320
002321 GGGGTCCACT GAGCTCAGCC TGTTGACCAA GATGTGGCCC ATGCCACTAT ATTCGGAGTC CATTTTCTGA TGCCCTCTCT 002400
002401 CAGCTCTTCG CCTGCACTCA TCTGTGACTG CCTGGTACTG CTAGGAAGCC TCTGTTTGTG TCTCATCTCT CCAGGTGGAC 002480
002481 TGGAGCTCCT GGGGGTCCTT TCCTTTGTGG GGGTTCTCAA TATCAGAATG GAGTCGCTTA TGTCAAACCC TAACAAAATG 002560
002561 GAGGTGGAGG TCACGAATTG GAGCCTATAT GCGTGCCTGT AACAGGACTT GTCACAAGGA ATCCCTGCAC ATATGTGTAT 002640
002641 GATGGGGACT ATGCCAGGAA CTCCTCACAT ATGGAGGATT CGAGGTAAGC CATTTGCTCA AGGACACTTA CCCAGCAGCC 002720
002721 TCCACTAATG AGACATCGCG AACTCCTGTA ATCAATGGTC TTTGTTTCTA AACAGCTTAT GTGGAATTCT CCGTTCACTC 002800
002801 CCCATTCGTG GGCTGCTTCT CCCAGGATCA GGCAGCCTCT GCCCACCTTT TCTCACTTCA CCCTTTCTCC TTGCAGAATT 002880
002881 AGAAAGAATC GGCTCCAGCT ATTTGTTTCT TACTGTGGAT TTATCCATGT GTCACCTCTC CCAGGCAGAA TTACATTCTG 002960
002961 AAGGCATCTC TAATTGAGAT TGCTCCATGG GGAAGGACTC TTAGGGCTCA GAAAGCAGGT GGTAAAGCCC TGGAGTGAGG 003040
003041 CAGGAACCCC AAAGCCCTAT GACACCCCAT ATAGGTACCC CCAAACCTGC CTATACTTCA GGCCAGGCCC CCAGTATAGA 003120
003121 GATGGAAAAA TAGTCCCACT TTTGGTCACA GATTCTGGAA AACTGTGAGA TTCTGGGGAA ATCCATTTTG AGTAATACCT 003200
003201 TTTAGAAGAA GAAAAAAATG GAAGTAGCTT ATCATAGAAT GGGTTTTGTT AGACAAAGAT GGCAATTCAG GAGGAAACAT 003280
003281 AAATTTAACA ACTCTCAAGT ATGCACAGCT GACATCTCGT AGAGCGGGGC TGGTGACTAA GCCAGAAGTT ACTGTCTGCA 003360
003361 TCCTTTGTAA CTTACAAATA AAAATGAGGA CCAGTTCTTG GTAGATTTTC TTTTATTTAC TTTCTCCTTC AAATACCCAC 003440
003441 TGGGTAATTT TTTACCCCTC GAGAAGCCTT GGAAAAGCAG TGATACTGGA TGCATTCCCT TATCTTATCA CTTGTCACAT 003520
003521 TCATTATGCT GAAATCATTC ATTTAAGTGT GACTCTCTCT TTTATTTTCC ATCAGGCGGC AGGTTCCTTG AGATCCAGGG 003600
003601 CCATGTGTTA TCCGTTTTGA TGTCCCCAGT GTCAGACTTA ATGCCAAGAG AGAAGTTGAT CTGTTTCCAT GTCACAGTCT 003680
003681 GGAGGTCAGC AGGTCAGGGC TGCTGGGGTA GCTCCACATC CTTAATACGT GCTTTCCATT TCTGTGTCTA AGGAGATACC 003760
003761 CTGGTTCTTC TCCTCTCCTT CCAGCAGTGG AAAGGGGGAA AGGGACTGGG CACAAGGGGT CGATGATACT ACCAATTTTT 003840
003841 TGAGGGCAAG ATCAGGATGT GACCCTCATC ACTTATAGAC TGGGAGCTCC ATGAGGTCCG AGACAACCTG AAGACGCCCA 003920
003921 GCTCAGCAGA GACTGGCTAC GGCAATCACT CAGTAACTAT TTGTTGAATT GGACATAATA GAAGAGCTGA AGAATTTTAA 004000
004001 ACAAGTCACC ATCAGTGCAG TGGATTCCTC AAAGCAAACC TGGAAATCTC GGCATGAGTT GGATTTAAGG CAGTACATTT 004080
004081 TCAGCTCCTG AAAATTTGAA CAGTTTCTCA AGAGAACAAC TTGAAACAGA AAGGCAAGGA TGTAGATGTG GTTGTAGAAG 004160
004161 ATGATGTCTG CGGCCACCAA ACTGTCCACT GTGAAGACAA ACCATGCATG TTTAGTAGGC AGTGGCTCCT CTTCCCTGTG 004240
004241 GGGAGTCCCA CTGCTTCCCT GGCCTGGGTG TTCTCTGCCG GTAGATGTTA TTGACAAAAT AAGCAAAGTC CTCTGATTCT 004320
004321 GAGAATTAGA GTTAATGATA GCTCTAGATT GCCTCTGCCA TGCTATTTAA AGTCCTGCTT TATTGTCTGA CATGAGTTCG 004400
004401 GCATCTATGA GGACTTGTCC AGTGCAAAGT ACAATCTCCA CTGAAAGATA TCACCAGCAC ATCTTGTCAC TGTGCTGTAG 004480
004481 CAAGCTGGGC AGTACAATGA TGTTGGCAGG ATCCTGTTTA GGTGGAGGAT GGCCACCTGG GCATCAAGAA TCTTCTACCC 004560
004561 TGATTCCACA TTGACTCCCC AAAGTGGGCT TCAGACAGCT CTTTACTTAC GTCTTCTGAT TAAAGCAGCA GACAGGGTCC 004640
004641 CAGCTAGAGA AAAGTTCTGG GAGCAGGAGA GGTGTTGGTG GCTTTAAAAC CAGGGGTGAA GATTGAATTA GGAGGTTAGG 004720
004721 CAGGAGTAGG ATCAAAGACT TAGAAAATGC TTGTTTCCTC CTATTATTCT TATGAGAGCT GATACGGGGC TTTCAGTTTT 004800
004801 GGGGGAGAGC CTTGGAAGAG AATGAGGGAA TTTAATCAAC TAGCGGGACC TTTCCAACTT ACATTTCCCA GTGTTTGTTG 004880
004881 GATGATACGT TTGCCTAATA AGTTAAAGCT TCCAAAAATA GAAAGGAAAG CTTGGTGACA CTAAGCTCTG GTATTGAATA 004960
004961 GCTCAGCAAC AGGGAGGACT TAATGATAAA TTGCTTTTTC AGAAAATGAC AAGGGGACAG ACACTTGCGG TTCAAATGCA 005040
005041 TGTTAGGTTG ACTCACTGTG TACTCTATTA CCCTCTCATC TGGTTTTTAA TCTTTCTGTC TCCTTATACT GTAATCTCAG 005120
005121 TGTTTCTTCT GCTTTAATTT TGGTATATGA ATTATTCAGC TGTGTTCAAA GTGTGGTTAA AGCGACTTAT ATGCTCTTTA 005200
005201 ATTTTTAGTT ATTGTACTTT TCACCTCTAG AAGTTCTTCT GTGACACTTC TTATAGTTTC CAGTTCCTGG TTAGAATTTG 005280
005281 CAAACTTGTT GACTATTTCT TTGAAAAGAG TAGCTAGAAT TGTTTTAGTC TGTGTATAGT GAGTTGAATA TCTGAAACCT 005360
005361 CTGTGAGTCT GTTTCTTTTG TCTGCTAGCC CTACTCATGG CGTCATGTTT TCCTGGATGT TTAGTTGGTT GTCTTTGAAT 005440
005441 ATGTCCAACT CCAGTTATTT CTGGGAATAC CCAAAGGCAC ACCTGTTCAC TATCACCCAG TGAACTGCCA TGTGTTTGTC 005520
005521 TCCTGTCATG GTAACATTTG CATTCAGGGA GAGGCCTCTG CTCTCTGCAG AACAGTGTGA AATCACCTCA TTTTTGCCTT 005600
005601 CAATGAAGGT TGTCTCTTGC TGGTCACCAC CTGGCCAAAC TTCCTAGCCT TATTTTATCT TCCTTTCTAG TTCTCCCCAG 005680
005681 AGGCTGCTGG GTCCACCTCT CCCTCTGCCA GACAGACAGG CTCAGACATG CAAGAACGGA AGGGGGTGTG GGGGTTGGTG 005760
005761 GGAGGATTAA GTTGGGGAAA GCCAGTCTTG TCTTTGTAGA TTACCAGAAC TGACACACGT ACACACACGT ACACTCACTC 005840
005841 ACTCACTCAC TCATCTATTC ATCTATTTTT GGCCTAAGTG CCTTTGGACA CTTCTTCGGA AAAGCACATG AACTCTTCGG 005920
005921 AGTCTCCTGT TCCACTTGGT AAATTTCCTA TAGCCACGCA CTGAAAGTCC CTGCTGCCCT CCTTCCTCTG AGCTTGTGGG 006000
006001 GCCCACAGAT CCCCTGCTCC ACTTCCTGCT TCATTTCAGC TGATGGTGAG TCCAGGGCAG GCTTGTAGGA AGGGCGGGCT 006080
006081 AGGCGTGGGG AACTGCAGCA CCCACCCCAC CCCCCGCCCC AGTGCTTGTT GCCCCAGCCT CTGTCTCCCT CGCTGTGCCC 006160
006161 TTCCCTTAAG CCCCACTCTT GGCCTCCCCA AAGACAGAGT TTGTTCTGTT TTTATTGATA GGATGACACT CCCTCGTTCT 006240
006241 AATACCATCT GAATGCCTGA GCAATTACAT CTTACAACCT CATGAAAAAC ACAGCAGCTT GTCACGATGA ATGATGTTAC 006320
006321 CGTGAATAAT GCAGTTTTGA GTTCAAACTC CTTCTTATTC CAAGAATGAG TAAATATCCC TATTCCCTCC CCTCCCCATT 006400
006401 GCATTTGGGT TTGACATGAC ATGAATCATT GTGGTTTTAC TCCTGGGTAG AATTGTTTTT CTGTATTGCA TTGCCAATTG 006480
006481 ATGGAAGGAC AAAAAAAGGA AACTTACCAA TGAGCAGTTT CAGATGAACT TAAATTCTCA GAAATCTTGA AGAATGAATG 006560
006561 AACTATAACT TTCTGAAGTT GCAAAAATGT TCAAGTCGGA AGTGACCCAT GGGAAGCAAC CTGGTCCTTA ATTAGGACTG 006640
006641 GAAAGAAAAC GGAGGCCCAG CGAGGGAACA GTGGCTTCCC CAAGGTCACA CTGCAAGTGA GTGGTGGCAC TAGTCACCCA 006720
006721 GGAGTCCTCC TGACTCCATG GTATCCTGAC CCCAGACCAG CAGCCTTATT TGTGGTTAAA GAACGTGGAA AAACAGCTTA 006800
006801 TGTTTGAATT TTAAAATCAT GCCAGTACTA AAGATCTGCA TTCCATGAAT ATTGAGCTTT GCTGTGTGCG GGTTGCTACG 006880
006881 AATTTTGTAA CTATTTTCTC TAAGAGCTCT CAGTATTTTA CATATACAAT TCCATTCTTT ATTGTCCAGG GAAAAAGTTG 006960
006961 CATTTACTGA GCAGTAAGAG GGTGATTTGA AGTCCCTGGG GTCCCCCACC CTTGTCTTTC TATGTGAGAT TGTATTGCAG 007040
007041 GGCTCACATT TATTCTCTCA GCAGCTCATT GCACAGACAG TGTATTTATT GAGCACCTAC TGTGTGCCAG GAGCTATGTG 007120
007121 GTAAGCTAAG CAGACAAAAA CTCCTGCTCT CACAAGAAGA AAGAATAAAC AAGCAGACAA TTGCACCTAT AATGTCAGCC 007200
007201 TGGTGTGATG GCTCACTCCT GGAATCCTAG CACTTTGGGA GGTGACGATG GGAGGATTGC TTTAACTC
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Predicted Small Protein

Name NONHSAT081842_smProtein_4391:4573
Length 61
Molecular weight 6390.3141
Aromaticity 0.0333333333333
Instability index 72.675
Isoelectric point 7.74420166016
Runs 10
Runs residual 0.0169326241135
Runs probability 0.0279102632043
Amino acid sequence MSSASMRTCPVQSTISTERYHQHILSLCCSKLGSTMMLAGSCLGGGWPPGHQESSTLIPH
Secondary structure LLLLLLEELLLLLLLLLHHHHHHHHHHHHHHLLHHHHEELLLLLLLLLLLLLLLLLEELL
PRMN -
PiMo -