NONHSAT081842
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT081842 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7268 nt |
Genomic location |
chr21+:35303858..35350075 |
Exon number |
18 |
Exons |
35303858..35304046,35307146..35307376,35308094..35308196,35310529..35310675,35312910..35313329,35315735..35316140,35318114..35318199,35321230..35321793,35334367..35334560,35334602..35334982,35334989..35335067,35336667..35337264,35339401..35339652,35340534..35340763,35341538..35342614,35342764..35342844,35347488..35348086,35348439..35350075 |
Genome context |
|
Sequence |
000001 TCACGCTGGG AGCTGTAGAC CAGAGCTGTT CCTATTCGGC CATCTTGGCT CCTTATTCTC ATTACCTTCT TGAGTTGTGG 000080
000081 CTCAGACACT ACAACAGAGC TCTGTCACCT CTTTCTAAAA GCTGGGAAAT GGTTATTGTC AACGCCAGCC CCATTTTGGA 000160 000161 GGCACCTGGT TGCAGGGGAC CACAGCTAGC CGGTTCAATG GGTCTGTAGG TCCTGAACTG AAAGTGTGAC AGGTTTCTAG 000240 000241 GGTGGGACTG GAGTGAACCA AATATCTTGA TAGGATAAAT TTTGCAGAAA TATTTTATAC AAGTAAAATC AACACTGTGG 000320 000321 ACTCAGCTTT GATGTTTTTA AAAAATTTTT GCATGCTAAA TTAAAAAAAA TTGTATTGCC CCCTGCTTTA TTGAGACATA 000400 000401 ATTGACAAGT AAAATTGAAG GACAACATGG TGAGGAGCAG CAAAGAAGAA ACGAGATACG TGTGGCTGCT TCATTTACTC 000480 000481 ATTCATGATT TTTGGTTAGC CTTTGAAAGT TTATTTTTCA ATACCCGAGT CATCCCTGGA GTCTCACACT TGATCTTAGC 000560 000561 CAAAAGGCCG AGAAGCGATC ATCCCTGGAG TCTCTCTGAA TCTGCCGTGA TCCTGGGGGC TGCCCGATTC GTGCATTGTT 000640 000641 CATTGCTCAA TTAAACTCCT TTAAATTTAA GAAAACGCTG CATAAGCCTC CCGTGGGGTT AAAATAAGAG TAAGAGAAAA 000720 000721 AAACATGACT TCATTGTGTG GGTGCCTGTG TTGAAGATGA TTTAGTAGCT TCTGCCGTGA GGCATTTGCT AGAATAAAAT 000800 000801 CCTTTCTGCC CTCATCATTG TCAGCACACT GGTTCGGGCC TTTAGCACTC CTACCTGGAT CGTGGAACTA AAGAATTTTA 000880 000881 GCAGCTGACA AGGACCTTAA AGATTGTAGC CTAACTCTCT CGCTTGTCAG GGGAGGCAGC TGGTGCCAGG CAGAAGAAGT 000960 000961 GGCATGTTTG GAGTGGCCTG CCTGGTGTCT GAGCCACACC TGACACCCAG TGTTCTTTCC ACTGGGCCTT TATTGCAATT 001040 001041 GTTTTCCTCT CTCTTTAGTC TCTTCCTGCT CCAGTAGGAT TGTACATTCC ATTAGGAGCT TCATCAAGCG TCAGCTTGCC 001120 001121 CACAGTTTGG TTTCCAGGGA GACTGGGAAG TAACAATACA ATAGTTCATC TTCATTATGA GTGTACCATG CCAAGAGCTT 001200 001201 TCCTAAGTGC TTTACATTCA TTATCCTCTT TAATTCTCTT AAGAATTGTA TGAGGTAGGT CCTATTATTA CCTCTATCTT 001280 001281 ACAAGGAAAC TGAGGATCAG ACAAGGATAT CTAGCTTATC CATGATTAGG TAGAGCTGAC AATGGGATTA AATAATCAAG 001360 001361 TCCTGCTACT GCCAGGTTAA GAAAACCCAG CTCTTTGTTG TTTTATAACA ACTGGGGGAA GCTGGTGTGC ATCATTGGCT 001440 001441 GATAGGAAGA GAAATTGAAT TCCACATCTA TGTCCTACTT CATGCATGGA TTGCCTGGGT GCGGTGGCTC AGGACTGTAA 001520 001521 TTCCAGCTAC ATGAGAGGAT TGCCTGAGGC CAGGAGTTTG AGACCAGCCT GAACAACATA AGCAGGCTTC GTGAGCTGGG 001600 001601 GAAGTGCCAG AAGCAGCCTT CGAATTAGAC AGACCTGGAC CCAAACCCTT TCTCTTCCCC CCACCCATTT TGGCATCTTG 001680 001681 GCACGAGACT GTCCCCATTT CTGGAAAGGG TGTTCACAAG AACAGTCTGG CTGGGTTGTT GGGATGACCG AGTGTGATCA 001760 001761 TGCGTCTCTA TGGCTGGCCA TGGTGTTTAT TCGATGGCAG GTATTACCAG GATGGAGCGA GTCCCAGTAG GAAGGGCCTT 001840 001841 TAGGATGTCA TCTGGTTCCA CCCAACAGGG ATGGGAACTG TAATTCCCCA CTCTCCCTGT GGAGAATCAG GGCGGGCTCC 001920 001921 GGATGGATGG CCAAAGGCTG CACAGAGGTG AGCCTCCAGG GTTGGGTTCT AAGCGCTGTT CACACTCCTG TCCCAGTGGT 002000 002001 GTTTGGTCTG GGGCACATTG TGATATGTGT TTCCCTCCTT TCTTAAAATT AGCTCTTGGC TTCAGGGCCT TGTAGTGGAC 002080 002081 TGATGTCCCT CCTTAACTGA ACAGTCAGTC TGCTTATTTT TTTGGGGTGG TTTAGGGGTA AAAAGCGCTC CTGTGAAGAG 002160 002161 GAAGCCTCAG GAGGGAGTGA GAGCAGAAGG GAGCCCACCT GTGGTTGTCT CAGCAACAGC AGAAGAACCT GGGCCGCTGG 002240 002241 GAGTGGAGTT GGAGAGAAAC AGGTTGATTT GGAAGTTCTT CTGCAGGTAG AACGGAAAGG CGAATTCTGC AAGATGCTCT 002320 002321 GGGGTCCACT GAGCTCAGCC TGTTGACCAA GATGTGGCCC ATGCCACTAT ATTCGGAGTC CATTTTCTGA TGCCCTCTCT 002400 002401 CAGCTCTTCG CCTGCACTCA TCTGTGACTG CCTGGTACTG CTAGGAAGCC TCTGTTTGTG TCTCATCTCT CCAGGTGGAC 002480 002481 TGGAGCTCCT GGGGGTCCTT TCCTTTGTGG GGGTTCTCAA TATCAGAATG GAGTCGCTTA TGTCAAACCC TAACAAAATG 002560 002561 GAGGTGGAGG TCACGAATTG GAGCCTATAT GCGTGCCTGT AACAGGACTT GTCACAAGGA ATCCCTGCAC ATATGTGTAT 002640 002641 GATGGGGACT ATGCCAGGAA CTCCTCACAT ATGGAGGATT CGAGGTAAGC CATTTGCTCA AGGACACTTA CCCAGCAGCC 002720 002721 TCCACTAATG AGACATCGCG AACTCCTGTA ATCAATGGTC TTTGTTTCTA AACAGCTTAT GTGGAATTCT CCGTTCACTC 002800 002801 CCCATTCGTG GGCTGCTTCT CCCAGGATCA GGCAGCCTCT GCCCACCTTT TCTCACTTCA CCCTTTCTCC TTGCAGAATT 002880 002881 AGAAAGAATC GGCTCCAGCT ATTTGTTTCT TACTGTGGAT TTATCCATGT GTCACCTCTC CCAGGCAGAA TTACATTCTG 002960 002961 AAGGCATCTC TAATTGAGAT TGCTCCATGG GGAAGGACTC TTAGGGCTCA GAAAGCAGGT GGTAAAGCCC TGGAGTGAGG 003040 003041 CAGGAACCCC AAAGCCCTAT GACACCCCAT ATAGGTACCC CCAAACCTGC CTATACTTCA GGCCAGGCCC CCAGTATAGA 003120 003121 GATGGAAAAA TAGTCCCACT TTTGGTCACA GATTCTGGAA AACTGTGAGA TTCTGGGGAA ATCCATTTTG AGTAATACCT 003200 003201 TTTAGAAGAA GAAAAAAATG GAAGTAGCTT ATCATAGAAT GGGTTTTGTT AGACAAAGAT GGCAATTCAG GAGGAAACAT 003280 003281 AAATTTAACA ACTCTCAAGT ATGCACAGCT GACATCTCGT AGAGCGGGGC TGGTGACTAA GCCAGAAGTT ACTGTCTGCA 003360 003361 TCCTTTGTAA CTTACAAATA AAAATGAGGA CCAGTTCTTG GTAGATTTTC TTTTATTTAC TTTCTCCTTC AAATACCCAC 003440 003441 TGGGTAATTT TTTACCCCTC GAGAAGCCTT GGAAAAGCAG TGATACTGGA TGCATTCCCT TATCTTATCA CTTGTCACAT 003520 003521 TCATTATGCT GAAATCATTC ATTTAAGTGT GACTCTCTCT TTTATTTTCC ATCAGGCGGC AGGTTCCTTG AGATCCAGGG 003600 003601 CCATGTGTTA TCCGTTTTGA TGTCCCCAGT GTCAGACTTA ATGCCAAGAG AGAAGTTGAT CTGTTTCCAT GTCACAGTCT 003680 003681 GGAGGTCAGC AGGTCAGGGC TGCTGGGGTA GCTCCACATC CTTAATACGT GCTTTCCATT TCTGTGTCTA AGGAGATACC 003760 003761 CTGGTTCTTC TCCTCTCCTT CCAGCAGTGG AAAGGGGGAA AGGGACTGGG CACAAGGGGT CGATGATACT ACCAATTTTT 003840 003841 TGAGGGCAAG ATCAGGATGT GACCCTCATC ACTTATAGAC TGGGAGCTCC ATGAGGTCCG AGACAACCTG AAGACGCCCA 003920 003921 GCTCAGCAGA GACTGGCTAC GGCAATCACT CAGTAACTAT TTGTTGAATT GGACATAATA GAAGAGCTGA AGAATTTTAA 004000 004001 ACAAGTCACC ATCAGTGCAG TGGATTCCTC AAAGCAAACC TGGAAATCTC GGCATGAGTT GGATTTAAGG CAGTACATTT 004080 004081 TCAGCTCCTG AAAATTTGAA CAGTTTCTCA AGAGAACAAC TTGAAACAGA AAGGCAAGGA TGTAGATGTG GTTGTAGAAG 004160 004161 ATGATGTCTG CGGCCACCAA ACTGTCCACT GTGAAGACAA ACCATGCATG TTTAGTAGGC AGTGGCTCCT CTTCCCTGTG 004240 004241 GGGAGTCCCA CTGCTTCCCT GGCCTGGGTG TTCTCTGCCG GTAGATGTTA TTGACAAAAT AAGCAAAGTC CTCTGATTCT 004320 004321 GAGAATTAGA GTTAATGATA GCTCTAGATT GCCTCTGCCA TGCTATTTAA AGTCCTGCTT TATTGTCTGA CATGAGTTCG 004400 004401 GCATCTATGA GGACTTGTCC AGTGCAAAGT ACAATCTCCA CTGAAAGATA TCACCAGCAC ATCTTGTCAC TGTGCTGTAG 004480 004481 CAAGCTGGGC AGTACAATGA TGTTGGCAGG ATCCTGTTTA GGTGGAGGAT GGCCACCTGG GCATCAAGAA TCTTCTACCC 004560 004561 TGATTCCACA TTGACTCCCC AAAGTGGGCT TCAGACAGCT CTTTACTTAC GTCTTCTGAT TAAAGCAGCA GACAGGGTCC 004640 004641 CAGCTAGAGA AAAGTTCTGG GAGCAGGAGA GGTGTTGGTG GCTTTAAAAC CAGGGGTGAA GATTGAATTA GGAGGTTAGG 004720 004721 CAGGAGTAGG ATCAAAGACT TAGAAAATGC TTGTTTCCTC CTATTATTCT TATGAGAGCT GATACGGGGC TTTCAGTTTT 004800 004801 GGGGGAGAGC CTTGGAAGAG AATGAGGGAA TTTAATCAAC TAGCGGGACC TTTCCAACTT ACATTTCCCA GTGTTTGTTG 004880 004881 GATGATACGT TTGCCTAATA AGTTAAAGCT TCCAAAAATA GAAAGGAAAG CTTGGTGACA CTAAGCTCTG GTATTGAATA 004960 004961 GCTCAGCAAC AGGGAGGACT TAATGATAAA TTGCTTTTTC AGAAAATGAC AAGGGGACAG ACACTTGCGG TTCAAATGCA 005040 005041 TGTTAGGTTG ACTCACTGTG TACTCTATTA CCCTCTCATC TGGTTTTTAA TCTTTCTGTC TCCTTATACT GTAATCTCAG 005120 005121 TGTTTCTTCT GCTTTAATTT TGGTATATGA ATTATTCAGC TGTGTTCAAA GTGTGGTTAA AGCGACTTAT ATGCTCTTTA 005200 005201 ATTTTTAGTT ATTGTACTTT TCACCTCTAG AAGTTCTTCT GTGACACTTC TTATAGTTTC CAGTTCCTGG TTAGAATTTG 005280 005281 CAAACTTGTT GACTATTTCT TTGAAAAGAG TAGCTAGAAT TGTTTTAGTC TGTGTATAGT GAGTTGAATA TCTGAAACCT 005360 005361 CTGTGAGTCT GTTTCTTTTG TCTGCTAGCC CTACTCATGG CGTCATGTTT TCCTGGATGT TTAGTTGGTT GTCTTTGAAT 005440 005441 ATGTCCAACT CCAGTTATTT CTGGGAATAC CCAAAGGCAC ACCTGTTCAC TATCACCCAG TGAACTGCCA TGTGTTTGTC 005520 005521 TCCTGTCATG GTAACATTTG CATTCAGGGA GAGGCCTCTG CTCTCTGCAG AACAGTGTGA AATCACCTCA TTTTTGCCTT 005600 005601 CAATGAAGGT TGTCTCTTGC TGGTCACCAC CTGGCCAAAC TTCCTAGCCT TATTTTATCT TCCTTTCTAG TTCTCCCCAG 005680 005681 AGGCTGCTGG GTCCACCTCT CCCTCTGCCA GACAGACAGG CTCAGACATG CAAGAACGGA AGGGGGTGTG GGGGTTGGTG 005760 005761 GGAGGATTAA GTTGGGGAAA GCCAGTCTTG TCTTTGTAGA TTACCAGAAC TGACACACGT ACACACACGT ACACTCACTC 005840 005841 ACTCACTCAC TCATCTATTC ATCTATTTTT GGCCTAAGTG CCTTTGGACA CTTCTTCGGA AAAGCACATG AACTCTTCGG 005920 005921 AGTCTCCTGT TCCACTTGGT AAATTTCCTA TAGCCACGCA CTGAAAGTCC CTGCTGCCCT CCTTCCTCTG AGCTTGTGGG 006000 006001 GCCCACAGAT CCCCTGCTCC ACTTCCTGCT TCATTTCAGC TGATGGTGAG TCCAGGGCAG GCTTGTAGGA AGGGCGGGCT 006080 006081 AGGCGTGGGG AACTGCAGCA CCCACCCCAC CCCCCGCCCC AGTGCTTGTT GCCCCAGCCT CTGTCTCCCT CGCTGTGCCC 006160 006161 TTCCCTTAAG CCCCACTCTT GGCCTCCCCA AAGACAGAGT TTGTTCTGTT TTTATTGATA GGATGACACT CCCTCGTTCT 006240 006241 AATACCATCT GAATGCCTGA GCAATTACAT CTTACAACCT CATGAAAAAC ACAGCAGCTT GTCACGATGA ATGATGTTAC 006320 006321 CGTGAATAAT GCAGTTTTGA GTTCAAACTC CTTCTTATTC CAAGAATGAG TAAATATCCC TATTCCCTCC CCTCCCCATT 006400 006401 GCATTTGGGT TTGACATGAC ATGAATCATT GTGGTTTTAC TCCTGGGTAG AATTGTTTTT CTGTATTGCA TTGCCAATTG 006480 006481 ATGGAAGGAC AAAAAAAGGA AACTTACCAA TGAGCAGTTT CAGATGAACT TAAATTCTCA GAAATCTTGA AGAATGAATG 006560 006561 AACTATAACT TTCTGAAGTT GCAAAAATGT TCAAGTCGGA AGTGACCCAT GGGAAGCAAC CTGGTCCTTA ATTAGGACTG 006640 006641 GAAAGAAAAC GGAGGCCCAG CGAGGGAACA GTGGCTTCCC CAAGGTCACA CTGCAAGTGA GTGGTGGCAC TAGTCACCCA 006720 006721 GGAGTCCTCC TGACTCCATG GTATCCTGAC CCCAGACCAG CAGCCTTATT TGTGGTTAAA GAACGTGGAA AAACAGCTTA 006800 006801 TGTTTGAATT TTAAAATCAT GCCAGTACTA AAGATCTGCA TTCCATGAAT ATTGAGCTTT GCTGTGTGCG GGTTGCTACG 006880 006881 AATTTTGTAA CTATTTTCTC TAAGAGCTCT CAGTATTTTA CATATACAAT TCCATTCTTT ATTGTCCAGG GAAAAAGTTG 006960 006961 CATTTACTGA GCAGTAAGAG GGTGATTTGA AGTCCCTGGG GTCCCCCACC CTTGTCTTTC TATGTGAGAT TGTATTGCAG 007040 007041 GGCTCACATT TATTCTCTCA GCAGCTCATT GCACAGACAG TGTATTTATT GAGCACCTAC TGTGTGCCAG GAGCTATGTG 007120 007121 GTAAGCTAAG CAGACAAAAA CTCCTGCTCT CACAAGAAGA AAGAATAAAC AAGCAGACAA TTGCACCTAT AATGTCAGCC 007200 007201 TGGTGTGATG GCTCACTCCT GGAATCCTAG CACTTTGGGA GGTGACGATG GGAGGATTGC TTTAACTC |
Predicted Small Protein
Name | NONHSAT081842_smProtein_4391:4573 |
Length | 61 |
Molecular weight | 6390.3141 |
Aromaticity | 0.0333333333333 |
Instability index | 72.675 |
Isoelectric point | 7.74420166016 |
Runs | 10 |
Runs residual | 0.0169326241135 |
Runs probability | 0.0279102632043 |
Amino acid sequence | MSSASMRTCPVQSTISTERYHQHILSLCCSKLGSTMMLAGSCLGGGWPPGHQESSTLIPH |
Secondary structure | LLLLLLEELLLLLLLLLHHHHHHHHHHHHHHLLHHHHEELLLLLLLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |