NONHSAT082198
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT082198 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3980 nt |
Genomic location |
chr21+:40897510..40901782 |
Exon number |
2 |
Exons |
40897510..40897992,40898286..40901782 |
Genome context |
|
Sequence |
000001 ATGTACAGTG CCGAAGACCT CCTGATCACT CATGGGTACA AACTGTTGAG AGACCTCCCA GCACCACGCA GGGATAACCC 000080
000081 TGAGGGATGC CAGCCAGCAA AGACAAGGAT GCGAGTGGTC TGTGGCCTGC TGAATAGGCA TGAGGATGGC CCTGCGGCCT 000160 000161 TTGCACATCA TAAGACACCT GCTGGGAAAG GGCGTGGGAG TGACTCTGAA AGCTGCCGCG CCACACTGAG AGGCCACGGG 000240 000241 GATCCCCAGA GCACTTCTGC TTCTAGAACC TCTGAGGCAG GGCTTCATAA TCAACCAACC CCAGACTGTT AATGACCAAG 000320 000321 CCAACTGGAG AAGAGGAGCG CGGGAAGTCA GCAGCCTGCT GGGTCCGAGG GACCCAGAAG ACCTGCAGGA ATGACCCAAG 000400 000401 CCCACAGTCC GCCCGTCCAC ATGAGGCAGC GTCCATAGGA AGTCAGAGGA AGGGCAGAGG ATGTGACGAA TAAGACAACT 000480 000481 TGGAAGAAGG CAGCTTGGGA AGAAGAATTG AGAATGTTGG GTCCTGCCAA GTGGCTGAAC GTCTGCAACC AGCCAAGGAA 000560 000561 ATTCAGGTGG CGGGTGTCTG ATGGTGATGG GAAGAAATTA TTTCAAGATC TGTTACTGTT CATTCAAGGA GAACACGTGT 000640 000641 CGAATTCTCA AAACAAAGAG AAATCCCAAT TATTGCCTAG AACTCTCCCC TCTCCCACCC CCATAGCCCT CCGACCCACA 000720 000721 GCCTGAATTG CACAGAAATT TCCATTCCAT TAAATGACAG ACATTTACCT AAAATGTCAC AGTATTCTCC CAATTATGCA 000800 000801 ACAAATTTGA AATTCACAAG TGACCCTGAG AAGGGTGGCT CCTTGGCCTC TTTTCCTCAG CCTAAGTTTG GGAGACCCCT 000880 000881 CAAGCCCCCA TCTGACGGCT TGCACCACCA GTCCCATAGG GAGTAGAAAG TGGTGACTAT CAGGACAGCC AGCAGCGGAT 000960 000961 CCATAAGTCC CCAGGCATGA GCTCTGCATG TCTGACTTTG GATTGGAGCC TCCAGTAGGT ACCTCCACCA TCACACAGGT 001040 001041 CACCCCCCAG CACATCCCAA GCCCCTACTT GGAAGACACA GTGCTCACTC ATATGTGGCA TTCACGGTCA GCAGCAGCCT 001120 001121 CCAACTGAGA AGGCCGGGCT GGTGGTCGGC TTCCTTGTGG CCCCCTTGGA ACTGGGCCCT GCAAACACCC TCTTACCTCA 001200 001201 GGGCTCCCTC CACACCTCCA ATCTGCCACT GCCCATGACA GCTTCATTCA GTACATTCCC TTTGATGACC CAAGGATATG 001280 001281 ACATATCAAA CCAGCTCAAC CCCAGGGTTT CTTTGAGGAC ACAAGGTTTG GTGATGAATC TTATAACTCC AGTCCTGTCA 001360 001361 CTGACCAAGA GCCAGCTCAT GGAAAAATGC TGATGGTGCC ATTTGGAATC CACAGAGCCT GATAGCCTTG TCAGGGAATA 001440 001441 AGAGAGGCCC GGCCTTGGCT GATCCTAGCC CCTTGTGGCC ATGGGTCCAG CTTCCCAGAA ATAGAGAAAA TGGTGGCTTT 001520 001521 CCTGACCAAA GAGACAGCTG TGTCATGAGA GGATGGCAGC CTGACGTGAG GGGCAGCCCT CACAGACACG CAGAAAGCCA 001600 001601 AGTTTCTTCC CCAAGCCCAC AGGGCGAGGG CACTCATGAA ACTCAAACCA AACTCAAAAA GTTTGAAACT GGGATTCGGA 001680 001681 CCAAGAAAAG TTCAAAGAAG TAAATGAAAA CCAAACAAAA AACAAGACTG TATTTTGTTT GATTTTCATC CCTGTGAAAT 001760 001761 CAGAATCACA GCTGCCAGAT ACAGGTACGG ACAACAATGA CTTAAATCTG AGTGGGTCTG ATGAGAGCAC AGCTCTGCAA 001840 001841 CCACAGAGTC TGCTGAGCAT GTCCTCCAGC GACCTGGGGC TGCAGGCTGT CACAGGAAGC ATGGGTGGGA GAATGGAGCT 001920 001921 CCAGAAACAA GATCTGGGGG TGGGGATCAG AAGAAGATAA AGCAATCAAT GACCTTGGAT TCATTTACCT TACAAAGCAC 002000 002001 AGTGAACTCC AGCATTCTGG CTCTTGGCCA GGGCACCAGT ACAGAGATCA GCAAACACAA ACCAGTTTCC CCAAAGAATC 002080 002081 CCAAAGCTCG CAGCTCCTTC CTGTTGCAAA GCTGGGAGGG TCTAGTGTGT CCCTGACTCC AAAATGTTTG GACCCTGCTG 002160 002161 CCTCCGAAGC TCAGATGCAC ACGGCAGTCC CTTCTGGTGA CCACAAATAG AGGTGAAGTG CCTGCAACCT GAAAGGTCAC 002240 002241 AGGTCCCTCA GCCCAGCCGG CAACAGTGCT TTTCCAAGGA CTTCCTTGTC CATAAATCAG GCACTGATGA CAAAAGCAGG 002320 002321 CTGAAGTCAG CCCTGTGTGG GTGTCTGTGG GCATGCAGTC CATCCCGGCC CAAGTGGGAG GTGGTGAAGG AGGTACCCAC 002400 002401 ATGTCTGTGC AACAGCAAAC AATGATTTGG GCGTTTTCTC CTGACACCAG TCAGCCATTG TGCCTGGGCT TATTAAGTTA 002480 002481 ACGAGTAAGT TTTAACAAGG AGCTTCAAGA AGACAAAGAA GGAAGACAAA GAAAACAGCT GCTGCAGCAA TGAGGAAACG 002560 002561 GAGGCGGAAC AGCAGCAGGA AAACTGTGCT GACCCCAGAC TGGAGAATTC AGGCTTCTGT GCAAACAGCC CGGAAATGAG 002640 002641 TTGAGCAACA GCCAAGGATG TGGGTGCTGG AGGACCCTGG GTTTAGTTGG GAAAAGGTAG ACATAAGTCT GAGAGCTGAG 002720 002721 GTGAGGAGCT GGAACCTGGC CACCTGCGTG TCTGGCCTCT GTCCCTGGGT CCCTCTCAGG TGGAGACGAC AGCCATGCAT 002800 002801 CCTCCGGGCA GCAGATGAAA GCTTGAGAGC AGAAGAGAGA CACCAGAAGG TTGGCAATGG AGGTAATGAG CCCAGGTCCT 002880 002881 GCAAAGAGAG TGATGTCTTC AAGATCAAGT GACACAAAAC CAGTGCCCCT CTCCTATCCG GCTGAGCCAA GGCGTCCCAG 002960 002961 GAAAGTCAGA AACTTACCAG CACTTTCAGT TCTGTGAAAC TGAGTGAAGT GGCCCCTTGG AAGGTTGATA GTGGTGGAGA 003040 003041 GAGGGACACA GTGCTCCCGC TGTCCCTGAC TAACCAGAAC CGAGGGCTCT TGGCACCAGA CTTTACAGGC TATGGTGTTC 003120 003121 ACCACAGGGC AAGAGTAGAG TGAGCCAGCA AGCTAGAGGG GTCTTTGAGG GAAGTGGATG CAATAGAAAC CCTCCAGGCA 003200 003201 AGTCCCTGCA AGTGAGGGCT GTGAGGATCC TGGGCATTGA ATGGCGGTGG CATTTCTCCT GCCAGTGCCC TGAGGGTGGA 003280 003281 GGCAGAACCA GCCTCCCTGA GGTGAGCGTC TGCAGCCCAG AGGCCCCCAG GCAAGAGTCG CTGTCCAGCT CAGCACTGGC 003360 003361 TGATGGCCTT ATGGTGTCCA CTGGTGCCTT TTATGGCAGG AGAAAGTGTG GCTGGACTGA AAGCCCTCTC TTGGTAGGGG 003440 003441 AAGGGAACAG TGCCACGTGG GCTCCCCAGG CTTCTGAGCA CTCAGACCTC ACTTAGGGTT GTCACCAATG GAGCTTCCAG 003520 003521 CCTTGAGTCT CAGGCTAACC CCTTGGAGTC CAAGTCCTTA AAGGAAGTGG GGGCAAAACT GCCCTTCATA TTCACTTTGT 003600 003601 TCTACTTCAT AGAGAGGACT CCAAGTGTGG CAGACTCAGA AAAGAGGCTC AGAAGTGCTT TCAAAGTGAT TGAAAGTTCG 003680 003681 CAAGAGAAAC TGGCTTCCCC CTGGCCAGGA GAGCAGACCC TGCCACCTGA TGAGAATGGA AGAGGTGTGT TGAGTGTCTA 003760 003761 TTGAGCTTCA GGAGTGCTGA CTCCCTGGAG GAGGTGGAGG GACTGAAGGC TTGGAGGGGC CAGGTCCACC TTCCAGAAGG 003840 003841 CTCTGTGTCT CTGAGAGGCA GGGACGACAG GGTCAGAGTT GGCCACTCAC TGTCTTTCTC CAAGGATGGT ATCTCACGGG 003920 003921 AAGAAAATGA GCATCTGGTG TCCAGATTCG TATGACCCTA GCAGAGAGGA GAGACTGTGA |
Predicted Small Protein
Name | NONHSAT082198_smProtein_2657:2911 |
Length | 85 |
Molecular weight | 9725.0399 |
Aromaticity | 0.0833333333333 |
Instability index | 58.2702380952 |
Isoelectric point | 8.45977783203 |
Runs | 12 |
Runs residual | 0.00887170154686 |
Runs probability | 0.0430651239475 |
Amino acid sequence | MWVLEDPGFSWEKVDISLRAEVRSWNLATCVSGLCPWVPLRWRRQPCILRAADESLRAEE RHQKVGNGGNEPRSCKESDVFKIK |
Secondary structure | LEEEELLLLLEEEEEEEEEEEEEEHHHHHHHLLLLLLLLLLLLLLLHHHHHHLLLHHHHH HHHHHLLLLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |