NONHSAT083936

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT083936

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1767 nt

Genomic location

chr22-:23980680..24033340

Exon number

5

Exons

23980680..23981129,23982495..23982610,24002052..24002187,24025912..24026054,24032419..24033340

Genome context

Sequence
000001 CAGATTTTCC AGAGTTTTAG GCTCTAGGGA CCCCTTTGTT TGCTGtgtct tagatcattg agtccctaca agaaccctgt 000080
000081 gaggttcgtc ttctcactac tccctgttcc agaggagcca accgaggctc cgagaggtgc atcttcaaga cagagccagt 000160
000161 aggggacaga ggcaCCTCTG TGTCTTGGAG GGGGATGGAC ACTCACCTTC TAACCAGTAG TTCCAAAAAG TGTGGCACAG 000240
000241 TGATAAAGTC CCAGGAGGGG CCCAGGCAGG TGGCATAGGA GGAGATGGGT TTAGTTAGAA AGGCTGGAAC CAGGGACTCC 000320
000321 CAACAGCTTC TCCCCAGTGC CGGGCTGGAA AGTTAGCATC CTGCAGATCT CATTTTCATA CTAGGGGGAC AAGGAGGGAC 000400
000401 ATGGGAGTCA GTGGTAACAC CATGGACCAC CAGAGGATCG GGATCTGGAA CTCACACCAA GAAGCACCAA CCCTTCAGGG 000480
000481 ACTTGTGCAT ATGGAGAACC TGGGTGCCCA TGGTGAAAAG CGTTCTAGGC TTTCAAAGTA ACATTGCATG TGAGGATGGA 000560
000561 GAATGATAAA ACGATTCCTG CCTTCAAGGC ATCGTCCCGG TGTTTGTCAG CTGTGGGGCA ACAGCACCCT CTGTGTCAGC 000640
000641 AACCTGCATG AAGAGCATCA TCCCTGCAAG TCCTCAAGGC CTGGGGAGGC CTCATCCCCT CCTCATTTCA GCAACAGCAC 000720
000721 ACAGGACAAT ACGCTCTAGA AGAACTCTTT GACTTAAAGG TATATGATTG TTTTTGTTCC TTTAACATGA ACGTGAGTCT 000800
000801 GGAGAAACAG CTACGGCCAT CCCAGCCCTG GCCAAGGGGA AAATGCCGGA AGACTCCAGG GTGGGAGGAA GCGCGTCCCA 000880
000881 AGGCCCAGGA TCTGCGAGGC GACTTGGGGA AAACGCAGGC AGGACCTGCT GAAGCTCACA CCCGTGGACC ACCCAGACTG 000960
000961 CCTGCCGCTA CAGGATGCCC TCCGCATCTC CCAGGACTTC TTTCCGGCAT CAGTGTGGAC ATTGACCCCA CTGGACTGCA 001040
001041 GTCACAGTGG ACTCCCAAGG GGCAGGATCC ACCTCTGATG TTCAGTGAAG ACTACCAGAA AAGTCTGCTA GAGCAGTACC 001120
001121 ATCTGGGTCT GGATCAAAAA CTCAGAAAAT ACGTGGTTGG AGAGCTCATC TGGAATTTTG CCGATTTCAT GACTAACCAG 001200
001201 TGTTCCTGCT CCAGCGTGGC TCCTGGACTG GCGCCAGATG CTGGCCCTGG GGGTTTCAAT CCAAGCATAA TTCAGTGAAG 001280
001281 CATGTGTTTG GCAGTGGGAC CCAGCTCACT GTTTTAGGTC AGCCCAAGAC TACCCCGTCG GTCATTCTGT TCCTGCCGTC 001360
001361 CTGTGAGGAG CCCCAAGCCA ACAAGGCCAC ACTGGTGTGT CTCATGAATA ACTTTATCCG GGAATCTTGA TGGTGACCTG 001440
001441 GAAGGCAGAT GGTACCCTCA TCACCCAGAG CGTGGAGAAG ACCACGCCCT CCAAACAGAG CAACAACAAG TACGTGGCCA 001520
001521 GCAGCTACCT GAGCCTGACG CCCGAGCAGT GGAGGTCCCG CAGAAGCTAC AGCTGCCAGG TTATGCAAGA AGGGAGCACC 001600
001601 GTGGAGAAGT CAGTGGCCCC TGCAGAATGT TCATAGGTTC CAGCCCCCAC CCCACCCACA GGGGCCTGGA GCTGCAGGAT 001680
001681 CCCAGGGGAG GGGTCTCTCT CTGCATCCCA AGCCATTCAG CCCTTCTCGC TGTACCCAGT AAACCCTCAA TAAATATCTT 001760
001761 TGTCAGC
[back to top]

Predicted Small Protein

Name NONHSAT083936_smProtein_647:751
Length 35
Molecular weight 3733.3987
Aromaticity 0.0
Instability index 70.8676470588
Isoelectric point 12.6034545898
Runs 7
Runs residual 0.0197319434103
Runs probability 0.0444015444016
Amino acid sequence MKSIIPASPQGLGRPHPLLISATAHRTIRSRRTL
Secondary structure LLLEELLLLLLLLLLLHHHLLLLHHHHHHLLLLL
PRMN -
PiMo -