NONHSAT083936
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083936 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1767 nt |
Genomic location |
chr22-:23980680..24033340 |
Exon number |
5 |
Exons |
23980680..23981129,23982495..23982610,24002052..24002187,24025912..24026054,24032419..24033340 |
Genome context |
|
Sequence |
000001 CAGATTTTCC AGAGTTTTAG GCTCTAGGGA CCCCTTTGTT TGCTGtgtct tagatcattg agtccctaca agaaccctgt 000080
000081 gaggttcgtc ttctcactac tccctgttcc agaggagcca accgaggctc cgagaggtgc atcttcaaga cagagccagt 000160 000161 aggggacaga ggcaCCTCTG TGTCTTGGAG GGGGATGGAC ACTCACCTTC TAACCAGTAG TTCCAAAAAG TGTGGCACAG 000240 000241 TGATAAAGTC CCAGGAGGGG CCCAGGCAGG TGGCATAGGA GGAGATGGGT TTAGTTAGAA AGGCTGGAAC CAGGGACTCC 000320 000321 CAACAGCTTC TCCCCAGTGC CGGGCTGGAA AGTTAGCATC CTGCAGATCT CATTTTCATA CTAGGGGGAC AAGGAGGGAC 000400 000401 ATGGGAGTCA GTGGTAACAC CATGGACCAC CAGAGGATCG GGATCTGGAA CTCACACCAA GAAGCACCAA CCCTTCAGGG 000480 000481 ACTTGTGCAT ATGGAGAACC TGGGTGCCCA TGGTGAAAAG CGTTCTAGGC TTTCAAAGTA ACATTGCATG TGAGGATGGA 000560 000561 GAATGATAAA ACGATTCCTG CCTTCAAGGC ATCGTCCCGG TGTTTGTCAG CTGTGGGGCA ACAGCACCCT CTGTGTCAGC 000640 000641 AACCTGCATG AAGAGCATCA TCCCTGCAAG TCCTCAAGGC CTGGGGAGGC CTCATCCCCT CCTCATTTCA GCAACAGCAC 000720 000721 ACAGGACAAT ACGCTCTAGA AGAACTCTTT GACTTAAAGG TATATGATTG TTTTTGTTCC TTTAACATGA ACGTGAGTCT 000800 000801 GGAGAAACAG CTACGGCCAT CCCAGCCCTG GCCAAGGGGA AAATGCCGGA AGACTCCAGG GTGGGAGGAA GCGCGTCCCA 000880 000881 AGGCCCAGGA TCTGCGAGGC GACTTGGGGA AAACGCAGGC AGGACCTGCT GAAGCTCACA CCCGTGGACC ACCCAGACTG 000960 000961 CCTGCCGCTA CAGGATGCCC TCCGCATCTC CCAGGACTTC TTTCCGGCAT CAGTGTGGAC ATTGACCCCA CTGGACTGCA 001040 001041 GTCACAGTGG ACTCCCAAGG GGCAGGATCC ACCTCTGATG TTCAGTGAAG ACTACCAGAA AAGTCTGCTA GAGCAGTACC 001120 001121 ATCTGGGTCT GGATCAAAAA CTCAGAAAAT ACGTGGTTGG AGAGCTCATC TGGAATTTTG CCGATTTCAT GACTAACCAG 001200 001201 TGTTCCTGCT CCAGCGTGGC TCCTGGACTG GCGCCAGATG CTGGCCCTGG GGGTTTCAAT CCAAGCATAA TTCAGTGAAG 001280 001281 CATGTGTTTG GCAGTGGGAC CCAGCTCACT GTTTTAGGTC AGCCCAAGAC TACCCCGTCG GTCATTCTGT TCCTGCCGTC 001360 001361 CTGTGAGGAG CCCCAAGCCA ACAAGGCCAC ACTGGTGTGT CTCATGAATA ACTTTATCCG GGAATCTTGA TGGTGACCTG 001440 001441 GAAGGCAGAT GGTACCCTCA TCACCCAGAG CGTGGAGAAG ACCACGCCCT CCAAACAGAG CAACAACAAG TACGTGGCCA 001520 001521 GCAGCTACCT GAGCCTGACG CCCGAGCAGT GGAGGTCCCG CAGAAGCTAC AGCTGCCAGG TTATGCAAGA AGGGAGCACC 001600 001601 GTGGAGAAGT CAGTGGCCCC TGCAGAATGT TCATAGGTTC CAGCCCCCAC CCCACCCACA GGGGCCTGGA GCTGCAGGAT 001680 001681 CCCAGGGGAG GGGTCTCTCT CTGCATCCCA AGCCATTCAG CCCTTCTCGC TGTACCCAGT AAACCCTCAA TAAATATCTT 001760 001761 TGTCAGC |
Predicted Small Protein
Name | NONHSAT083936_smProtein_647:751 |
Length | 35 |
Molecular weight | 3733.3987 |
Aromaticity | 0.0 |
Instability index | 70.8676470588 |
Isoelectric point | 12.6034545898 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0444015444016 |
Amino acid sequence | MKSIIPASPQGLGRPHPLLISATAHRTIRSRRTL |
Secondary structure | LLLEELLLLLLLLLLLHHHLLLLHHHHHHLLLLL |
PRMN | - |
PiMo | - |