NONHSAT086890
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT086890 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1375 nt |
Genomic location |
chr22-:41581221..41593505 |
Exon number |
3 |
Exons |
41581221..41582327,41591486..41591525,41593278..41593505 |
Genome context |
|
Sequence |
000001 CCAGCGCGTG CCCGCCCGGC GCCCTCTAGG GTGGAAGGCT GCGGGCGTCC TACCAGTGCC AGGACTGCCA GAGCGGGAGG 000080
000081 AGCGCGGCGC GGGCCAGCCG GGACTGCTGG ACAGCGGGGT CCAGGCTAGA GGCGAGCGAG CGGTCAGTGA CGGCTGTGGA 000160 000161 GGAGGGAGGC GCTGGGCGTC AGCGCGGGAC CCGAGCCTCT GGACCACTGA GCTGGGGGGC TGGCTGAGGT CCACCTCCTA 000240 000241 ACAAATTATT GGAAGGAATA TGAGAAAAAT GGAGTTTCAC TCTTGTCACC CAGGCTGGAG TGCAATAGAG CGATCATGGC 000320 000321 TCACTGCAAC CTCTGCCCCC CGGGTTCAAG CGATTCTCCT GCCTCAGCCT CTCAAGTAGC TGGGATTACA AGTGCCCACC 000400 000401 ACCACGCCCA GCTAATTTTT GTATTTTTAG TAAAGATGGG GTTTCACCAC ATTGGCCAGG CTGGTCTCTA ACTCCTGACC 000480 000481 TCACGTGATT CATCCATCTC AGCCTCCCAA AGTGCTGGGA TTACAGGCAT GAGCCACTGT GCCTGGCCTA TACTTATATT 000560 000561 TTCTTCTGTG ATTTTAATAT TTTAGTGTTT ATGTTTTGGT CTATGATCCA TTTTGAGTAA ATTTTTATAT TTGGTATAAG 000640 000641 GTAGGGGTCC AACTTTATTT ATTTTTGAGA TGGAGGCTTA CTCTATTGCC CAGGCAGGCA TGCAATGGTG CGATCCAGCT 000720 000721 CACTGCAACC TCTGTGTCCC AGGCTCAAGT GATTCTCCCA CCTCAGCCAT CTGAGTAGCT CGGATTACAG GCCCCATCAC 000800 000801 TATGGTAATT TTTAAATTTT TAGTAGAGAC GGGGTTTCAC CATGTTGGCC AGGCTGGTCT CGAACTCATG ACCTCAAGTG 000880 000881 ATCTGCCCGC CTCTGCCCTA CAAAGTGCTG GGATTACAGG CGTGAGCCAC CGTGCCTGGC CTCCAGCTTT ATTCTTTTTT 000960 000961 TTTTTTTTTT TTTGAGACAG AGTCTTGTTC TGTCACCCAG GCTGGAGTGC TGGAGTGCAG TGGCGCGATC TCGGCTCACT 001040 001041 GCAAGCTCCG CCTCCTGGGT TCACGCCATT CTCCTGCCTC AGCCTCCCGA GTAGCTGGGA CTACAGGCGC CTGCCACCAC 001120 001121 GCCTGGCTAA TTTTTTGTAT TTTTAGTAGA GATGGGGTTT CTCCATGTTA GCCAGGATGG TCTCGATCTC CTGACCTCGT 001200 001201 GGTCTGCCTG CCTCGGCCTC CCAAAAGTGC TGGGATTACA GGCGTGAGCG ACCATGCCCG GCCAACTTTA TTCTTTTAGA 001280 001281 TGTGGATGTC TAGTTGTTCC AGAAGTATCT GTTAAAAATG TTACTCTTTC TCCATTGGAT TATTTTGGCA ACCTTATAAA 001360 001361 CAATCAATTG ACCAT |
Predicted Small Protein
Name | NONHSAT086890_smProtein_1151:1246 |
Length | 32 |
Molecular weight | 3270.8175 |
Aromaticity | 0.0645161290323 |
Instability index | 56.4806451613 |
Isoelectric point | 5.19390869141 |
Runs | 7 |
Runs residual | 0.0245295698925 |
Runs probability | 0.0390264213795 |
Amino acid sequence | MGFLHVSQDGLDLLTSWSACLGLPKVLGLQA |
Secondary structure | LEEEEELLLHHHHHHHHHHHLLLLHHHLLLL |
PRMN | - |
PiMo | - |