NONHSAT087037
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087037 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5423 nt |
Genomic location |
chr22-:42660336..42665758 |
Exon number |
1 |
Exons |
42660336..42665758 |
Genome context |
|
Sequence |
000001 CGGAGGGCAG GTACCGGCGG GTTGGGCGCA AGGTCCCGGC GCAGGACACA CTTCCTGTGT GGGGCGGCCT CTCCTCCCGC 000080
000081 GCCGCGGGGA ACAGGGCGGG GTGTGCAAGC CGGGGTCTCT GGGCGAGGGA GCGCTCGTTT GGGGACCTGA GGCTTTCGTC 000160 000161 CCTTTTTCGG GGGAAAGTGG TGGTTTGAAG GAGCGTGGCC AATCGGGCCG ATCCCTCTCA GGCTACGGCG GGAGGTGCAC 000240 000241 TGTCCTCTGG ACGCCGGAAT GGGAGTGGAA TTTAGTGAGT TGGGGGGCGG TGCCGAGGAG CGGCCGTCTT CCTCTGCTTG 000320 000321 TGGGTGGGAT TATTGTCTGT TTTTGTGGTT GCGGATACCA ATACGGTCTG CTGGTCTGTA TTCAATCCTT TAGTTTGACC 000400 000401 TTAGGGGTCA GGTCAAAATT AGGATTTCCC CCTTTTCCTT TTTGCTTTTT TTTCCTCGAA GATTAGATGT CTCTGGTAAC 000480 000481 TGCTGTAAAA TGGATGGAAT TTTCGAGCTA TTATCTAACA GGCTGATCTT TGAATGATAA TTGGACCCTT ATGTTAACAG 000560 000561 CCTCAGTGAA GAGTGAAGAG TTTTATACAG CATCTTCCGT GGGGTggcag ttaggtggat ggggaagcta cactgaattc 000640 000641 cgacctggga gaccaggaat ctgcttacag ctttgacgcc aaataaactg cagcccaggg caagttactt tccctggtaa 000720 000721 ttttctcatc tgttaagtga ggaCTCCCGG GTCAGACGGT ACAGGGGTTT GTGGTTTTGC TTTTTTATCT CTCATTTTGT 000800 000801 GCTCTGTTTT AGCCATAGGC AACTTTTCTG AGAAATGCAG ACTGTACCTT AGCTGGCTTT TAAAAGCCTG TCTTTAAGCT 000880 000881 TCCAGCCTCT GCCTTCAACA GAGCATAAAA GTTGGTCAGG GTACGCTCTT TTTTGAAATC CCACTTGCTG TTCTGTGCTT 000960 000961 CAGATCAGAA AGTGTATTAT TCTGACCTAG GTGGAATGCA CCTTAACATA TTTTTTGTCT TTGTGAAAGA AGTTATCAGA 001040 001041 AAATGTTTCA GAGAATATTT GTCTACTTGG AAAATGTGTG GATAACATGT GATTGGGTCT GTGTATGTTG GCTCAGAGGA 001120 001121 GTTCCAAGAT CTTTCTACGC AGGGGATTTT GGAGGATCCA GATTTTATTA AAGTTCTTCA AAGGACATTT GACATTTGGC 001200 001201 TAACTGTTGA AATTTCCAGC CAGTTTCAGC ATTCTCAGAG TAGGGGGATG AAGTAGAATG CCATAACATC TCCTGTGAAA 001280 001281 TGGTATGCTA GTGGAATTAA CTGTCACCTC AGGGTGCACT GATTATCTGC ATCCCCAACT TTCTCCTTAC TGGTAGCCAG 001360 001361 TGCTCCGCAG ATGCTGAAGA ACCGCAATTA GTTTCACTGA TTTTATGGTG TGTGAAGGCC TTAGGCTGTG CTTTTGACTG 001440 001441 GTAAGTATTT CTATACCAAC CTCAGAATTT GTCTTAAATT TCTAGAACTG TGCTGCTGGG CCGGATATGA GCCCAATATG 001520 001521 TTACAATATG TCTTTCTCAG ATCACttttt atttttatat attatttaat ttttaaaatt aaatCCCCtt ttatttactt 001600 001601 atttattttg acacagtgtt gttctgttgt ccaggctgga gtgcagtggc acgatctcag ctcactgcag cctctacctc 001680 001681 ccagtttcag gtgattctcc tgcgtcagcc tcccgagtag ctgggattag aggcatacac taccacaccc ggctaatttt 001760 001761 tgtattttaa gtagagacaa catttcgcca tgttagccag gctggtcttg aactcctgac ctcaggtgat ccgcctgcct 001840 001841 tgacttccca aagtgctggg attacaggtg tgaaccactg cgcctggGCT AGATCACTTT TTGATTCAGT CTCTTTGAAC 001920 001921 AGTTTCCAAA AGGATCCCAG CATAGGGGCA GAGTGCTTAT AATTATTGAC TTCGGAGACA GTTTGGTAGT AATTTTCTTG 002000 002001 TATGTTACCA TCAGGCCTAT CACACAAGTA AACACttttt tgtttgtttt tttgagacag agtctctctc tgttgccagg 002080 002081 ctggagtgca gtggcactat ctcggcccac tgtaacctcc gcctcccggg ttcaagcaat tctcccacct cagcctcctg 002160 002161 agtagctggg actacaggtg cgcaccacca cgcccagcta atttttgtat ttttagtaga gatgggattt caccatattg 002240 002241 ggcaggatgg tctcaatctc ttgacctcat gatccacccg ccttgggccc ccaaagtgct gggattacag gtatgagcca 002320 002321 ccatgcccag ccCACAAGTA GACACTTTTA TATAGCCACA CAGATTATTT GTGATTTTCT AGAATAAACA GTTTGTTAGG 002400 002401 ATTTGAATTA TGACCTTGCG TTCAGTGTGG TGTTTAAAAA AACTCCGATT ACTCAAATTG Gttttgtttt ttctgttgtt 002480 002481 gttttgagat ggagtctcgc tcttgttgcc cagctgggag tgcagtggtg cgatcttggc tcactgcaac ctcagcctcc 002560 002561 agggttcaag cgagtctcct gcctcagcct cccgagtagc taggattaca ggcatgcgcc acctcgcctg gctaattttg 002640 002641 tattttcagt agagacggga tttctccatg ttggtcaggc tggtctcaaa ctcgacctca ggtgagccgc ctgcctcagc 002720 002721 ctcccaaagt gctgggatta caggcatgag ccaccgtgcc cggccTATTA AATTGTAAGC AGTTATCATG CTCACATGTA 002800 002801 TATTACACTT GTCTTATAAA ACTTACAAGG GAAAAAATTG TTATAAAATT TTCATTCTAC AAAGTAATTT GTGTGTATTC 002880 002881 ACGTGAGAGG TTGCCAAAGT TGGTAAGATA TCGGGAGACA TGGCTTTTAG GTTCCATAAC CTAGTAGTGG TATACttttt 002960 002961 tgtttgtttg ttttgagacg gagtctcgct ctgttgccca ggctggagtg cagtggcaca gtctctgctc actgcaacct 003040 003041 tctctttcta ggctcaagcg attcccctgc ctcagcctcc cgaatagctg ggattacggg ctcctgccac catgcctggc 003120 003121 tatttttttg tatttttagt agagatgggg attcgccatc ttggccaggc cagtctcgaa ctcctgatct caggtgaggt 003200 003201 caggaggtta tcagcctgcc tcagcctccc aaagtgctgg ggttacagat atgagccact gcacctggcc AACTTTTTAA 003280 003281 AACTCTGTAA GATAAAATGG AATGTAATTG AAATGATCAC ACTTAATTGG AGTTGGACTT TTTCTCATGA GTCCAACCTA 003360 003361 CCTTTCATAT AGGCAGGAAA AAATGCTGGC ATTTGTATAA AAAACAAGCT TTTGTGCTAG ACTCTGTCCA AGGCATTTTA 003440 003441 AATTGTGTTA CAATATCCAC CCAGCTGACC TTAGAGATAG ATGACCTTTC CTTTCCCTGA GAGCTGGTAG AGCTAATGAG 003520 003521 GCTCAAGGCT TAGATATAAC CCTCCTGCTG TTGGCTCCAG AGCCTGTGCT GTACTAGGTT TGTTGCCTGC TCAAGGCACA 003600 003601 AATCAGTCAG TGGTAAGTGC GGCCCTGGAA TCCATATCTT CCTGCTGTGC CCCTCttttt tttttttttt aattttaaaG 003680 003681 CTATGATGAA CCTGAAATCT AGATTTAGGT GAAATACTGG AAAGGGTGGT TTTTGTGACT GCTTATGGTT TTGTGACCCC 003760 003761 CTGGGAGTTC CCTAAACTTT TACCTTGCCC ATACTTGGTC AGTTTTGCCA GTGTACTTGA GATTTAATCT GTGAAAAAAT 003840 003841 TTCTCTTTTC ATACTTAATT CCGTCATTCT GTCCTGAGCT GAAAACTTTG GTATCAGCTT AAAGAGTAAC ATAATACGTA 003920 003921 AAGGGCTATC TCTTCCTGAC TAGTTTACAA TGCACTAGAA TCATTTTGTA TGGTGACTGC TCTCACTCAG TTCGACTGGG 004000 004001 TGGGACTCAA AAGATATATT TACCAAAGAC AGTTCTTTCC ACAGTATGCC TTAAGCCTTC TTACTCATGG GGACTTTGTG 004080 004081 TTCAAGGCAC CTTAGTACTC ATTCATTCTG TCTGGGGCTT TGTCTCTGCT GTCTTCATTT TCTTTTTGTG GAGGTAAAAA 004160 004161 AGTAACAAGA TAAAGCAAAA CAATAAAACC ATTGAAGTAA AACGGTACAT GACAGTGATA CCTTTGAAAT ACAGTAagcc 004240 004241 tgggcaacat agtgagacct ggtctctgca aaataaaaaa ggccagatgt gacgtgggtg cctgtagtcc agactattca 004320 004321 ggaggctgag gtgtgaggat catttgaacc tgagaggttg aggctacagt gagccatgtt gttgccattg tactccagcc 004400 004401 tgggagacag agcaagatcc tgtccaaaaa aagaagaaaa agaaTACAGT ATACTGAAAT CAAGGTATTT ATAGTTAGTA 004480 004481 GAGCATAATT TGGTCACATT GCACTGGATA GTTTTTGATT ATTGGTTAGG CTGTTGAAAG TCCTGTAATA CCCTTGGTAC 004560 004561 ATGTGGTATG GGTGAAAAGG TTCTCATGGC GACAAACACA ATCAGTACTT TCTGTGTAAG AGCAATGTTT GCTTTTTGGG 004640 004641 TAATATGCGT GACCCAGCAG GAAGATGAAC TATAACATGA GTTAGCTGGT ATATCCGTGG CTTATTATCT GGTGTTTCAT 004720 004721 AGTGGGGAAT TAAAACTACT AGGGAAAATA TCATTATTGC AGTATGCATA TGTAAGCTGT TCTATAGGAA AGAGTAGAAA 004800 004801 TTCATTGGAA CATTTGATAT CAGTATGATT GGAAGATGGT TTCCACTTTT GAATGTCATG TCCCTGAATG TGGATTAAGG 004880 004881 TCCGCGTGCA TGTGTGTGCT AATTTGCATT AACAAGTATT TACAGGCATT CTAAGTATGG GAAATGTGAT GGTGGGCAAG 004960 004961 AAAGAGCCTA CTCTGGAGAC AGACTGTAAA CAGTAAATAA AAATGTCAGG TGATGATAAT AGCGGTGAAG AAAATAAGAA 005040 005041 AACAATGTGA AATAACTCAG GGGATGTTAC TTTAGAGTGG TCACAAAGAT AATCCCTGTT CTGAAGCCTT TTCTGCCAGT 005120 005121 AGGGCAGTCG AACTTGATCT GTGGGCTGGA TGAAAATGAC ATTAAACAAA GTAAATAATT TGTTTAGCCC TGAGCATCTT 005200 005201 GAGAAGTTAA TCCAAAGGAT GGAAGTGGGC TGGTTGAAGT GTTCCCTCTG TTTATATCTT TTTGGTTTGT GAATAGGGAC 005280 005281 CTGGCTCAAA AGAGCTTAAG GGAGATCATT AGTGGTACCT TGTAAAGGCT AAGAAAGAGG AGTGTTGTCT GCTTTTTTTA 005360 005361 AAAAATCATC CTGATAAAAA ATGTGGAGAT GTATTGTAAT ATTGGTGAGT GTTAGACAGT GTA |
Predicted Small Protein
Name | NONHSAT087037_smProtein_1517:1693 |
Length | 59 |
Molecular weight | 6920.2508 |
Aromaticity | 0.206896551724 |
Instability index | 59.5775862069 |
Isoelectric point | 9.18414306641 |
Runs | 8 |
Runs residual | 0.0186623721106 |
Runs probability | 0.0488319201555 |
Amino acid sequence | MLQYVFLRSLFIFIYYLIFKIKSPFIYLFILTQCCSVVQAGVQWHDLSSLQPLPPSFR |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHLLLEEEEEEHHHHHHHHHLLEEEEELLLLLLLLLLLL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooooooooooo |