NONHSAT087104
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT087104 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1945 nt |
Genomic location |
chr22+:43671961..43679836 |
Exon number |
2 |
Exons |
43671961..43672017,43677943..43679836 |
Genome context |
|
Sequence |
000001 CACAACCTTT GAAGAAGGCA GGGCAACAGG GGTGAGGAAG CTGGCTGGGT TTGGGAGGTA ACCACAGCTG CTGGGACGAG 000080
000081 GACTCCTCTG GCCAACCGGA ACAAGCTGGA ATCTTCGGTG TCAGAGGAAC CCTGGCCACG GTGCAAGGAC AGGCTGGCCT 000160 000161 GAAGGAGGCA CCCAGGCATC GGGAGCAGCT GGACGGTCAA CAGGGTGAAG GGAGTTGAGA AGGGCACCGG GGACGGGAGA 000240 000241 GGCAGTGGCC CCAGGGTCTC TGCTAGGTTG CAAGTGAATC AAAAGCAACC ACACAGGAAA AGTGTCAGGC ACAGGGCAGA 000320 000321 GGCTCAAGCA CCCTCCAGTG AGGCCCATGG TGTAGAGAAA CAAACAGACA CCAGGATGGA CACGGGCACC CATCCCTCCA 000400 000401 GGCGCTGTGG ACCTGGGACA GCCACGGAAT TGCTTGCAGT CAGATGGCGC AGGACGGTGG ATGGCATCTG AGGACTCTCT 000480 000481 CTGCTCCAGA CATCATTCCA GGAAAGTGAC GGGACTGGCC TGTGCCTCTC CCCAGGGTTT CTGGCTCCCT GTCTCCAGAG 000560 000561 TCCTACTTGA AGTGCTTTTT TAAGGCCAGC TGCCTCCAAT CCGTTGCTGT CCACCAAGGT CTGGGCCCAG ATGACGCTGC 000640 000641 CAGCCCCTTG CCCTCTCTTT CTACCACAAA CTCCTGCTGC TACCCAATCT CCCCCCTTAA TCCTCCCAAC AGCATCCTGC 000720 000721 CTATGTCACT CTGGCCCCTC TGTCTGCTGA CCACCCACCT TCTCTCCATC AGTTGGCCAC CACCTCAGAA GCCACCTGCT 000800 000801 CTTGCAGGCT TCTTTTTTTT TTTCTTTTTT TTTTGAGATG GAGTTTTACT CTGTCACCCA GGCTTGGGTG CAATGGCGCG 000880 000881 ATCTCAGCTC ACTGCAACCT CCGCCTCCCG GGTTCAAGTA ATTCTCCTGC CTCAGCTTCC CAAGTAGCTG GGATTACAGG 000960 000961 AGTGCGCCAC CATGCCTGGC TAATTTTTGT ATTTTTTGTA GAGATGGGGT TTCTCCATGT TGGCCAGGCT GGTCTCAAAC 001040 001041 TCCTGACCTC AAGTGATCTG CCCACCTCGG TCTCCCAAAG TTCTGGGATT ATAGGCGTGA GCCACGACAC CCAGCCTCTT 001120 001121 GTGGGCTTCT CCAACCCCTT TCCATATCCC ACTGGCTCCA GCCCTGAGCT CAGCTTCCTC TGCCTTGAAC AGCCCGCTAG 001200 001201 CCAAGCCCCT GGCCCTGCTC CTCATCCAGC ACGCCCTGCC CAGGCACATG TAGATTTGGG GACCACAGGT TGACCAGCAT 001280 001281 ATTGGGCAGG AAGGTTCCTC TTCTCCTTAG AACCCAATTT CCACACTTGA AAAAAGAAGG GGGAATCCAT GGGGGTGGTT 001360 001361 GTGATTCCTT TAAACACTGA CAGACAGCCG TGGGAGAGGG TCATGATTTG AACCCAGACC ACTGGGTTCC AGTCCTGCCA 001440 001441 CTATTGGACA CACTGTTTGC CTCTGTGAGC TTCTGACCCA CATCTGCAAC ATGGGAGCGG CTAGTACTCA GCTCACAGGG 001520 001521 TTCAAGGAAT TGCAATGGAT AATATTAGTA TCCATCTGAG GGTTCGAGGG GTCAAATGAA GCAGTATTAG GGTGACCCAA 001600 001601 TGTCTTGCTT TGCCTGGGAC AGTCCCAGTT GATATCCACA GCCCTGGCAT AATTAATAAT AGTATCTCCT TTCATTCTCA 001680 001681 CAAGTGTACT GATTTGGATA TTGTTCAATT ATAACTAAAT GCGAACTATT GACTGCGGTG GTTGTGATGT GGATCCGTAT 001760 001761 GTCATAAATG GCGTGGAGCC ACACTCACAC ACTGTACCAA CGTCCAGCTA CCGGTCTGGA TGTTAAACTC TAGTGACGTA 001840 001841 AGATGTCACC ATTGGGGGAA ATTGGGTAAA GGGCATCTGA GACCACTCTT CACTATTTTT TGCAGCTTCT TATGGATCTA 001920 001921 CAATTATTTC AAAATAAAAA ATTCT |
Predicted Small Protein
Name | NONHSAT087104_smProtein_722:835 |
Length | 38 |
Molecular weight | 4346.204 |
Aromaticity | 0.27027027027 |
Instability index | 57.2 |
Isoelectric point | 7.99908447266 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0415878062936 |
Amino acid sequence | MSLWPLCLLTTHLLSISWPPPQKPPALAGFFFFFFFF |
Secondary structure | LLLHHHHHHHHHHHHLLLLLLLLLHHHHLLEEEEEEL |
PRMN | - |
PiMo | - |