NONHSAT087919
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT087919 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1948 nt |
Genomic location |
chr3+:10322636..10335133 |
Exon number |
7 |
Exons |
10322636..10322686,10323823..10323918,10325205..10325287,10327432..10327537,10329098..10329165,10329629..10329790,10333752..10335133 |
Genome context |
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Sequence |
000001 ACATGGAAGT CTCCAAGCCT GTGCCATCCA CCTGCCAAGG AAAAGCACAA GCTCAAGGCT GTAGGAGGAA GAAAAATCTA 000080
000081 GTCCCTGGGG GTACTGATGA ATCAGTTGGA TGGTGGGCGT TGGACTGTGA ATTCCTGATG CCTCTGGGCA GTAGAGCGAG 000160 000161 GGAAGCTGCA ctggctgaga ggctgtggaa ccggatgaaa aagcagcccc tgagtcctgt ggcgttggct CATACAGTTT 000240 000241 GAACATTTAT TCGCCTCCTG AGCTTGTACA ACAGTCGTGG GAGTTGCTGC AGAAGCAAGC GAAAAGCCAG ATGAGCGCTT 000320 000321 CTAAACTTAG AGAGAGGGAG AGCGCCTCAT CTCTTCCATT TTCCAGGTAT TCCTGAGATG ATTTATTGGA GCTCAAAGCT 000400 000401 TTGGGAGAGT TGGGGCCTTC CATTCCCTCC AGTAAATACT TGTTTTTCTT CCACCGCTGA GGCAAATGCG GGGTGGCTGA 000480 000481 TCACCTGGCA GACATCTTAG GAAACAGGAG CACCGGTCTG GGAAACTGCT GGCCTGGCCT AACACCTGGC GCTGTGGTGC 000560 000561 AGGCAAGAGG GCAGCCACTG AGGATTCTTG AGGAGAGAGA Gaccatagaa tgaatgaaag agttggaaag actttaaagc 000640 000641 tctgggaggc tgaatccttt atttcgctgg aagaaaaact gaatgccaag agggcctcac tttccccaaa gctatacagc 000720 000721 catcaggggc aatgctggga ttcccccatg gatctcttga ctcctaatac agtgctcttt ctgatatgcc atctgGCTCC 000800 000801 ATAATGAACA TTGTGTTCCA GGAAAATCAG TCTGCGCTGA ACAGGATGGA ATTGGGGCAG GACGTCCAGT GAGGAGGACA 000880 000881 TTGAGGCAGT AGAGCAGTTG ATTGCCGAAT GACCACCTAC CCTGACTTAA AAGATCAACC TCAGGGAGGA TTGGAGCTTT 000960 000961 CTAGAGTCTC TTGGGACAGC AGAAGCACAG GCCGGGTTGG ACTGAATCTT TAAGTGGACA TGAGGGACAA AGTACCTCCT 001040 001041 GTTGGTAAAC ATCTCACCAC CAACCCACTG TGGTGGCTAA AATCCCACCT TTAGTCCCAG CAACATATGA GCATGTCACC 001120 001121 AGGAGGTCTT CACAGGCCTG TCTGCCACCT GAGTGTAGAC ATCTTTTGGC CCTGGAGCCC AGAGAGGCTG AATGTGGAGA 001200 001201 GGGTGGAGAG AGGTCTGTAG TCCTCAGAGA AGACTTGCAG CTTTTTCAGA GCCACCAACC CATAAAAAAA AAAATCCCCA 001280 001281 AACAGAAAAA TCCTAACTGT GGTGACCAGG TACCTCCTGA GACATGAAGC CTCCACTTAC CTGGACCCTG GAGGCCTCTC 001360 001361 CGGGCACAGC TGCCAATGTT GATCTTAGAT AAGACCACCA GCAAGTAAAC ATCCACTGTG CAAAGCTGTG TTATCTTTGG 001440 001441 GGAACTGAAA TGTCCCCTGG GAGTTGGAAA CTCCCCTAGC CACATACCAC AGAGTTGAGG AAGGAAGAGC TGATGGACGG 001520 001521 AAGAACCATG GCGGGAGGAG TCATCCGGAA GCTACCTCGC TGCCCTGTCA GTTACGGAAC AGAGGAGAGA TGCCGGCTGG 001600 001601 AGGACACAGC AAATTTGAAC CAAGAGGAGC TTGGAGGAAG CCCGAGCGAC CTGGAGGGGA CTGGCTGACC TTCCTCATTC 001680 001681 TTTTCAAGTG TGAATAATAA CCAAGCCCAG TTTGGCAACT CCTTGAGGGT GAGGACGAAG CCCCATTCTC CTTTTTGGAA 001760 001761 CTTGGTGGGG CTCAGGAAGC AGGTTCTCTC CAGTCGGTGG CTTTCCTTTC TGTTGCGGGT CTCTTGAGGG CCTGCCTTCA 001840 001841 TGAAGGCACA TGAGTGACTC ATCATTTGTG AATTAATTGC TATATGTGAA GGGCATCTGA GAACAAATTA TCTTCATAGA 001920 001921 CTTTTCATTA TAATTTTATT TGTACTGA |
Predicted Small Protein
Name | NONHSAT087919_smProtein_2:241 |
Length | 80 |
Molecular weight | 8690.0347 |
Aromaticity | 0.0506329113924 |
Instability index | 49.3632911392 |
Isoelectric point | 9.56793212891 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0465786642257 |
Amino acid sequence | MEVSKPVPSTCQGKAQAQGCRRKKNLVPGGTDESVGWWALDCEFLMPLGSRAREAALAER LWNRMKKQPLSPVALAHTV |
Secondary structure | LLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLHHHHHHLHHHHLLLLLHHHHHHHHHH HHHHHHHLLLLLLLEEELL |
PRMN | - |
PiMo | - |