NONHSAT089838
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089838 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2526 nt |
Genomic location |
chr3-:50400286..50403213 |
Exon number |
4 |
Exons |
50400286..50402237,50402319..50402615,50402787..50402913,50403064..50403213 |
Genome context |
|
Sequence |
000001 GAAGGTGCTC CCTGGCCGGG AGGGCTCAGA AGAGAAGTAG GGCATGGCAT CGTCCTCTGC TGACCACCTG CACTCGGCTC 000080
000081 CCCGTGCGCT GCAGGTCCCT GTTCCAGCAG CTTCTCTACG GCCTCATCTA CCACAGCTGG TTCCAAGCAG ACCCCGCGGA 000160 000161 GGCCGAGGGG AGCCCCGAGA CGCGCGAGAG CAGCTGCGTC ATGAAACAGA CCCAGTACTA CTTCGGCTCG GTAAACGCCT 000240 000241 CCTACAACGC CATCATCGAC TGCGGAAACT GCTCCAGGCT GTTCCACGCG CAGAGACTGA CCAACACCAA TCTTCTCTTT 000320 000321 GTGGTGGCCG AGAAGCCGCT GTGCAGCCAG TGCGAGGCTG GCCGGCTGCT GCAGAAGGAG ACGCACTGTA Tcctgccccc 000400 000401 gccctccccg ccgcccgctc cccctctgcc ccgcgcgccc cctccgtgcc gccgccgccg tccgcctcct tgactcccca 000480 000481 cccatgcccA GCGGACGGCC CGGAGCAGTG TGAGCTAGTG CAGAGACCGC GATACCGGAG AGGCCCGCAC ATCTGCTTCG 000560 000561 ACTACAACGC GACAGAAGAT ACCTCAGACT GTGGCCGCGG GGCCTCCTTC CCGCCGTCGC TGGGCGTCCT GGTCTCCCTG 000640 000641 CAACTGCTGC TCCTCCTGGG CCTGCCGCCC CGGCCGCAGC CTCAAGTCCT CGTCCACGCC TCTCGCCGCC TCTGAGcacc 000720 000721 ctgccccacc ccacctccac tcccacctca cccGGCCTCT TCGCCTTTCC CACCCTCCTG CCCCACACTC CCCGCCTTAG 000800 000801 AGCCTCGTCC CTCCCTCACT GAAGGACCTG AGCTGGCCAG GCCCTGAGAG TCTGGTCTGC GCCTTGGGAT GGGGAGTCCC 000880 000881 AAAGCGGGAC GCCGCAGGTG TTTGGCACCC AAATCACATC TCACCTCCGA ACTGTTCAAG TGTCCCCAGA CCCTTCTTGC 000960 000961 CTGCTGGGCT CCCCCCAGTG GGATGGGACA GGGAGGCCAC ACGCACTGGT GCCAAAACCA GGCCTCTGCT GCCGCCCTTC 001040 001041 CTGGAGGCTG CCTATGTTGG GGGGGACCCT GCCTCAGCTG ACCCGGCCTC TCTGCCCCAC CCAAGCCCAA ACTTGGTTTC 001120 001121 TGTGAGAATA GTGGAGGAAG GTGAGATGGC CAGTTTGAAG CCTGTGCCTC CCAGCTTAAA TCCTAGCAGG AGAGAGGCTC 001200 001201 TGGGGCAGCC CCCATGGGCT CCTGCCCCTT TCAGGCCTAC AGCCACATCC CCAAGCCCAC CAGGTGTCAG GATAGTCACA 001280 001281 GTGATACCAG TTCAGACACT ACCCCATATA CACCTGGAAC ATTGAGGATG GAAACTGGAC TCACATTCGA CATACCCCAC 001360 001361 TGGGCACACG CACAAACACA CACACTATGG GGTGGGGTGG GTGTAGGGGC TTACAAAGCC TTACACAGGG CGAGGGGTTG 001440 001441 GTGGGAGGGT TGGCACCTGC ACACTCCATC TCCTGCTCAC CACCTGCCTC TAATCTGAGC TGCAGCCTGG CTGGTCCTCC 001520 001521 CATTTCTAAA GCTGAATGTC AAACAGTGCC AAATGCTGGG GCAGGGGGTG AAGAACCCTC TGTCCCACCC CTAGCCACCA 001600 001601 GTGTCCTCCA AGTGCCCCCT CACCTCTCCA GGTGCTCATT GTAACCATTT CTCACTAGTG TCAGGCCCCC AGTGGGACCA 001680 001681 CATGCCACTG CCTGCACCTT TCGGCAGAGG AACCCCCACC AGACATCACC CTTTGCCTTA GCAGGGGTGA CTTTGTCTCT 001760 001761 CCTGGCTGGG CCATCCTTCC GCCAATCTGG CCCTTACACA CTCAGGCCTG TGCCCACTCC CTATCTCCTT CCCACCCCTA 001840 001841 CACACACACT CCCTGCTTGC AGGAGGCCAA ACTGTCCCTC CCTTGCTGAa cacacacaca cacacacaca cacaGGTGGG 001920 001921 GACTGGGCAC AGCTCTTCAC ACCATTCATT CTGGTCATTT CCCCCAAAGG CATCCCAGCC TGGGGGCCAG TGGGGAACTG 002000 002001 AGGGCAAGGG GATATAGTGA TGGGGCTCAG ATGGACTGGG AGGAGGGGGA GGGTGATGCA TTAATTAATG GCTTCGTTAA 002080 002081 TTAATGTCAT GTTGCTTGTC GCTTTCTCAG TGTGTGTGTG TGGTCCATGC CCACTGCTGG TGCCAGGGTG GGTGTCCATG 002160 002161 TGCACCCGGC CTGGATGCCA GCTGTGTCCT TCGGGGGCGT GCGTGTAACT GTAGTGTAGT CAGGTGCTCA ATGGAGAATA 002240 002241 TAAACATATA CAGAAAAATA TATATTTTAA GTTTAAAAAA CAGAAAAACA GACAAAACAA TCCCCATCAG GTAGCTGTCT 002320 002321 AACCCCCAGC TGGGTCTAAT CCTTCTCATT ACCCACCCGA CCTGGCTGCC CCTCACCTTG GGCTGGGGGA CTGGGGGGCC 002400 002401 ATTTCCTTTT CTCTGCCCTT TTTTTGTTGT TCTATTTTGT ACAGACAAGT TGGAAAAACA ACAGCGACAA AAAAGTCAAG 002480 002481 AAACTTTGTA AAATATCGTG TGTGTGATTC CTTGTAAAAT ATTTTC |
Predicted Small Protein
Name | NONHSAT089838_smProtein_200:472 |
Length | 91 |
Molecular weight | 10038.6079 |
Aromaticity | 0.0666666666667 |
Instability index | 71.5711111111 |
Isoelectric point | 9.49578857422 |
Runs | 14 |
Runs residual | 0.01569664903 |
Runs probability | 0.0472909884674 |
Amino acid sequence | MKQTQYYFGSVNASYNAIIDCGNCSRLFHAQRLTNTNLLFVVAEKPLCSQCEAGRLLQKE THCILPPPSPPPAPPLPRAPPPCRRRRPPP |
Secondary structure | LLEEEEEEEEELLLHHHEELLLLHHHHHHHHHLLLLLEEEEEELLLLLLHHHHLLLLLLL LEEELLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |