NONHSAT090178
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090178 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2556 nt |
Genomic location |
chr3-:62247494..62304622 |
Exon number |
4 |
Exons |
62247494..62249817,62302781..62302867,62303483..62303575,62304541..62304622 |
Genome context |
|
Sequence |
000001 ATAAAGGGCC GCCTTGGGGC GCGAAAAGTT CGTGAGGTGT AGTCGCGGCA ACCAGGAGGT GCACCCACCA CTAGAATTTG 000080
000081 AACATCCTAA GAACAGGTAT TTTTGTCTCT GCTTTGCTGA TGTATCCTCA GCAACCGGAA CTGCCTGACA TCTGATCCTT 000160 000161 TCTGTGAGAC ACCAGGCTGT TGAGGAAGAA TCTATGGCAA CATTGTATCT ATTAATATAC AGCTTCTGTA TTTATCAGAT 000240 000241 GGAGTCTCAC TCTGTCACCC AGGATGGAGT ACAGTGGCGT GATCTCGGCT CACTGCAAGC TCCGCCTCCT GGGTTCATGC 000320 000321 CATTCTCCTG CCTTAGCCTC CCGAGTAGCT GGGACTACAG GCGCCTGCCA CCACGCCCGG CTAATTTTTG TATTTTTAGT 000400 000401 AGAGACAGGG TTTCACCGCA TTAGCCAGGA TGGTCTCGAT CTCCTGACCT CGTGATCCGC CCGCCTCAGC CTCCCAAAGT 000480 000481 GCTGGGATTA CAGGCGTGAG TCACTGTGCC CAGCCAAGTT TAGTATTTTT TGTAGAGACA GAGTTTCACC ATGTTGGCCA 000560 000561 GGCTGGTCTT GCACTCATGG CCTCAAGTGA TCCACCTGCC TCGGCCTCCG AAAGTGCTGG GATTACAGGC GTAAGCCACT 000640 000641 GTGCCTGGCC TTAAATGGGT AAATTTCATA TGGTATATGA ATTATATTTC ACTAAAACTT TAAGAAAACA TTATACAGTA 000720 000721 CTGTTCAAAT TTTAAGTGGT CCAATTTAAA TGCACTATTG TATACAATTC TATGTAATGT CCTTACCATG GTATATGTTA 000800 000801 ACTATAAATA TCTATGCCCC TACCCTTAGT ATCAAAGCAT ATATTATATG CCAGTGAGCC AAGCCCCACA TGTCTGTGAA 000880 000881 ATGTGGTCTT CTAGCCATAG AAGTAGCTTG TGCTCCTAGG GTATTCCTTG AGGCTCTGTA TGAAGAATGT CCATTTGTTT 000960 000961 GAGTCCCTAA CCTACAGAAT ATTCCTGACC ATGGAAATGT GATAGATAGG AGTAAGCACA TGGACCAAAA GGCCTGGAGG 001040 001041 CTCATCATTT AAGGTACAAG CCAATTATGT AGTCTTTGAA AGAATGCTTT GAAATTCAGC TTGCTTGATT CAATTCCCAA 001120 001121 TATTTTCATT TGTATTAAAA GATTTGGCCC TTACAGGTTA AAAACAATGT CAGTGTAACC AAGTGACATT CAAATTTTGG 001200 001201 CTCCCAACAT GTGATATGAC ATCACTTCAT GTGAAAATAG CGAAGCTCCA AACATTTTCT TTCAGTCACC TTATTAAGCT 001280 001281 CGCTGAGCCC TGACAGCCTA ATGAAAGGCT AAGGGGGAAG AAAATGTCCC AACTTCTACA CTGTTGAAGA TGGGCTAATG 001360 001361 AGAGGTTAGC TTGCAAGAAT CATTCTTTCT TGGCATCCTG CTTCTGACTG CTTGGCTTTC AGCTTATACC CAGCATGAAA 001440 001441 ATTTAATTTC CTCGCAGTTG AAGGTAGTTT AAAGCTTATT ACTCACATGC TAAAATGTTG ATGTATCTGT TTTTGTGCTT 001520 001521 GTTTTCTGGA TGATTGGAAT GCTCTGCAGT GATGTTCATA TCAGCAGTAC AGCGCTGGAC TTCCTAGTGA AGAAAACAGC 001600 001601 AAGATTATAG ACACAGTTTA GAAACAAAGG AACACCATAT ACATTTAAAG GCATAAAGTA TTTACTCACT CCCTGGCCAC 001680 001681 AGCCACCGTT ACCTTCTCAA TCCCAACTTC GGATATAATT ATTGATATAT TTATAACGAG TTTATGAAGA ATGTGAAAAA 001760 001761 GGTATAAAGA TTTCATTATT TACTATTTCA TCAATCATCT ACTTTTTTCT AGTTTTTGAC CTAGTCCCTG AGATGTAAAA 001840 001841 CAATATCTCT TTTTGAATAC ATCATAGTCT ATGGGTGAGA AAAATATTCA AAAAGATAGT CAAACATGAT GAATACAAAA 001920 001921 GAGGCCTGAG AAAGCTCTGA TGGGAGCACA GAACAGAGGA AGGCTTTAGA CAGGTGAAAA AATTTACCTA AGTCTTAAAG 002000 002001 GAAGAAAGGG AATTTCTAAG AAGTATAATC TCTACCATGA TTTGCAATAT GCTTACAGGC CTTATAGCCT CATTTTATAA 002080 002081 TTGTGAGGGT GCATTGACTC TAAAGACTCA GTGCTGAAAT AACCCTAATA ACAGCCCAAC TAATGGTCAT ATCTCATATA 002160 002161 TACAGTCTTG ACAAATTATT TGTGAACTCT AGTATTTTAA AAGTTATCCT TCTTTGGAAA AATAGCAGTA GCAGAAATAA 002240 002241 CACTCTTATC CTACCTTGGC CGTGGATTTA AACGTCATCC ATTAGCCTAA TACAACGTTG CTGAAAAGCC AAATTTTTCT 002320 002321 ACACTATATG CTTCAAACCC AAGAAAGTAC TGGAGCTGAC TAATAAGGGA AGTCATTAGC AGTACACAGC TGCTACAAAG 002400 002401 AGCCTGAACA AAGTAACACA AAATTATCAG GAGAAATGTT TTACACAGAA CAGATGTAGC AGAGTTTAGA AGCATGCAGA 002480 002481 CTTTTTTTTT CCACAAAGGA GTTGCCTAGT AATTATGCAT GTTTTCCATA GTATTTACAT TAAACATAAT GAAAAC |
Predicted Small Protein
Name | NONHSAT090178_smProtein_263:454 |
Length | 64 |
Molecular weight | 6752.7405 |
Aromaticity | 0.0634920634921 |
Instability index | 46.5142857143 |
Isoelectric point | 7.82537841797 |
Runs | 14 |
Runs residual | 0.0772594752187 |
Runs probability | 0.037556464027 |
Amino acid sequence | MEYSGVISAHCKLRLLGSCHSPALASRVAGTTGACHHARLIFVFLVETGFHRISQDGLDL LTS |
Secondary structure | LLEEEEEEHHHHLLLLLLLLLHHHHHHHHLLLLHHHHLEEEEEEEEELLLEEELLLLHHH LLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooo ooo |