NONHSAT091203
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT091203 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1671 nt |
Genomic location |
chr3-:112723811..112727647 |
Exon number |
2 |
Exons |
112723811..112724851,112727018..112727647 |
Genome context |
|
Sequence |
000001 GATGGGACCT GTCCTGGTAC AGAGGGGGAA CAAAACAACT TGTATTTGGA GCAGTGGAGA AAAATTCAGT TTTTAAAGAC 000080
000081 ATAAGGAAAG CTTAGTGAGC AAAAAAATTT CCTTACAGAC TGATTTTTTT TTTTTAAttt ttaggttttg tgggtacgta 000160 000161 gcaggtatat atatttatgg ggtacgtatt ttgttataag catatagtgc ataataacca cagggtaaat ggggtatcca 000240 000241 tcacttcaag catttaGGGA CTGATAATTC TAATTTTTAA ATTTTGATTG TGAGCTAGCT TTCCTTGTTG TCATATAATT 000320 000321 ACAAGTCAGT AACATGTCCA ATATATTTTT CTCATCTTTC CACGTTTCAG GAGACCAGTT TTGATTTTAA ATGTTCTCAA 000400 000401 TCCAGACTAA AGACAACCAA GTATTCTTCT CAGAAAGTGA TAGGAACTCC TCATGCCAAA AGTTTTGTGC AAAGATTCCG 000480 000481 AGAGGCTGAG TCCTTCACAC AACTTTCTGA AGAAATCCAG ATGGCAGTTG TATGGTGCAG GAGCAAAAAA CTCAAGGCTC 000560 000561 AGGCCATTTT TCTGGGTAAC AAACTTCTTA AAAGCAACCG GCTTAAACAT CTGGAAGCTC AAGGTACTAG TTTGCCAAAG 000640 000641 AAACTAGAGT GCATAAAAAC GTCTATTTGC AACCACCTTC TTCGTGGCTC AGGTATCAAA ACTTCAAAGC ATCATCTGAG 000720 000721 ACAGAGAAGA TCACAGAATA AATTTTTACG GAGACAAAGG AAACCACAGA GAAAGTTGCA GTCGACTCTT TTAAGGGAAA 000800 000801 TTCAGCAGTT CTCTCAAGGG ACTCGGAAGA GTGCTACAGA TACCAGTGCT AAGTGGAGAC TCTCACACTG TACTGTGCAT 000880 000881 AGAACTGATC TCTACCCTAA CAGTAAGCAG CTCTTGAATA GTGGAGTTTC AATGCCTGTC ATACAAACTA AGGAGAAAAT 000960 000961 GATTCATGAA AATCTTAGAG GCATCCATGA AAATGAAACT GATTCGTGGA CGGTGATGCA AATAAATAAA AACAGTACAT 001040 001041 CAGGAACCAT TAAGGAGACA GATGACATTG ATGATATTTT TGCTTTAATG GGAGTTTAGA TGTTCGTTCA TATGTGAGAC 001120 001121 TTTTAAGTGA TTAACAAGGC TAGTTCAGTG TTCTAAGTAG AACTGCTAAG ATCTGGAAGT ACCACCTGGA CTCACAGAGG 001200 001201 AGCTGCTTTA GTGCAGCATT GCACAGGAGT TCATTTCAGT TCAGTCTACA TTTAAAGTAG CATTGTGTCA TTTCATCAAC 001280 001281 AAGTATTTCT TTTTTGGCTT CAACTACATG TCAGGTGTTA ATATGAAAAA TCTGCCACAG CCTACCCTTG AGAAGCAGAT 001360 001361 GTAATTCCTT GAGTGAGGCT AGTAAGTCTC TGAAAAACTG AATAATTTTA TGACTTACTA GGCAATTTAA TAATCGTTTG 001440 001441 CAAAAACCAT TGTGTCTTGA GGTAAATGAG GAGCGGGGGT GGGAGATAGC AAGGAAACAC CTGAAAGGTC AATTTGGTCT 001520 001521 TATTGGCTCC ATTATACATA GGTCCGCCTC TGAATACTAA AGTTTGTAGC TCCTGACATT TATGTTTTCT TGTTTATATG 001600 001601 TTGGAATTGA TCAACAAGGT TTGCCACTGC TTGTATTACC AGGGACTGGT TACAACCATT ATTTCTCTTC A |
Predicted Small Protein
Name | NONHSAT091203_smProtein_452:646 |
Length | 65 |
Molecular weight | 7521.8417 |
Aromaticity | 0.125 |
Instability index | 44.9515625 |
Isoelectric point | 10.7892456055 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0416494926299 |
Amino acid sequence | MPKVLCKDSERLSPSHNFLKKSRWQLYGAGAKNSRLRPFFWVTNFLKATGLNIWKLKVLV CQRN |
Secondary structure | LLLEELLLLLLLLLLHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHLLLLLLEEEEEE EELL |
PRMN | - |
PiMo | - |