NONHSAT096836
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT096836 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6052 nt |
Genomic location |
chr4+:74124504..74130555 |
Exon number |
1 |
Exons |
74124504..74130555 |
Genome context |
|
Sequence |
000001 gtcacctcta ctgccgccgc cgccgccgcc gcTCCGCCAG CTCTCACCTC GTCTCGCGAT ACTAAGGGCG GGGAGCCTGA 000080
000081 CGATgggagg gagggaggga gggagaggga gggagcaagg gaaggagggT GAGGCGTAAC AGGGAGACCG GGTGTCGGGA 000160 000161 GAACCAGAGG AGAGGAGACT GGAAAGAAGC GGGGAAGTGT GCCTGGGGCA GCTTCCGAAG GGGAACGGCG GGGACAGATG 000240 000241 AGGGGGGCGC GATTGCAACC AGAGCGCCCG CGAGCTCCCG GATTTCTTCT CTTTCCTCGC TATTTCCCGC ACACACAGCC 000320 000321 CTGCAGCCCT CCCTTCTTCC TTCCTGGCTT GTGATTAGAA CGCAGCCGCA GGCGGAAGTG CAGTGACGCC ATCAGCCGTC 000400 000401 GCCTGAGCCG TGGCGCGCGG GTGGCCGAAA GGCGAAAGTG AGATTTCAAG GGCCGGGTCT GGGGCCCCGC GGGCGCGCAG 000480 000481 TGCTGCGGCG TGTGGGGAGT ACGGGGAGGC TGGAGAGGAG CCGGCCCCGG GCAGTGTGAG GTGCGGAAGC GCGGTCCAGA 000560 000561 CACTTTGCTG ACGGGAGGCC GGTCCGCCAG ATCCGGGAGG TGGGGCCTCG TTCTGGACTG CTGTACGTAG TTTTATTCCT 000640 000641 GGTCATTTTT TTCCACCGCC AAATCGAGAG ATAGAGCTTT GGATCATGAG AGATGGCGTC GTGTTGGGAA AAGAGCCTTC 000720 000721 TTTACCTGAG TTTAAGCTCG GCTCATAGAC ATCctctacc tgagtttaca cgtgtgtaat atgaaggcag tcgattagga 000800 000801 gatgtctaag atcATTACTT ACACCTCAAG TTTCCAAGGG GAGGAAGACA CGGGAAGGAT GCGTGGTCTG TGCCAGACTT 000880 000881 TGTAGACGAT TCACTGAATG ACCCTGATTT AGCTCTTCCG GCCCTCTTCG ATTCAGCTTG GAAGCAAGCA TAAATAGTGA 000960 000961 TTGTTGTCTG TATACTTCTC TCGGAAGGAA TGCTGTTATG GGAGTTGTGG GTTCATTTTT AGGTGTCTGA AGAAGTTTCA 001040 001041 GGACTTTTGA AATGATAGTG GAGCCCATTG AACTCAGAAT TATCCCTTTC TGGTCTAGTA GGAGTATAGT GGCATACGGA 001120 001121 AAATGAAGCA AACATCAAAG ACAGATGTAC TGGCACAAGA TTAAAAGTAT GTCTCAGCTG ACATAGTTGC CATTTTAAGA 001200 001201 CTGCTTAGTT TAGCTGAATA TGCCTGGATT TTTTTTTTTT TTAGCATTTT TTTTCTTTTT AGCATTGGCA TACCATATGA 001280 001281 AATGTGGGCA GTTGCCAGTA CTCTACAGAG TACCAAGGCA GAATTGGCAA TGACTAAATC Aattcattca aacaaaaatt 001360 001361 catcatgtgc ctactgtgcg cATAATTTGT GGAATCAAAG TCTCTTGTTT CCAGGGGCTT TACAGTGTAA TAAGTGCTAT 001440 001441 AGTAAATATA TATACGGAGT GGTAACCATC TGCCTATTCC TCTCCTACAG TCGTTGCTGA GTTCCAGTGT AGAACAGAGC 001520 001521 ACTGCATTGT GTATCTCACC ACTACTGATT TAGATTTTAT AATTTCAGCT GCATCCCTCC CTCCTACTTT GTATATTCTT 001600 001601 CAGCATCTTT TTCTCCCTTT CCACTTGAAT ACTTTTCGCA ATCTTTAAAT CCCAGCCCAT TTTATTATAT GACTTTTAAC 001680 001681 TTAGACTTCA CAATTTTCCA AGTGCTAGAA ATTTCCTGAG ATTGCCTTTT CTCCAGTATC AACGAATGAG AGACTCCCTG 001760 001761 TTCATATATG AGATAAACTC TTCATACATA TTCTAGTTCC AATACCCCTC TTTCTCATGC ATTTATTATC TTTTCTGTTG 001840 001841 TCAACCTTCT ACAAATTCTG GTTCCTTAGC TAATTCTTCT GTAGCTTTCA ATTATTTCCT TCACAAGCAA ACTTTCTTTC 001920 001921 TTTAAAAAGT ATTCTAtact caggaggctg aagcaggaga atcgcttgaa cctgcgaggc ggagtttgca gtgagctgag 002000 002001 atcctgctac tgcactctag cttgggcgac agagcgagac tccatctcaa aaaaaaaGTG TCTACAATCA GTGTCTTTTT 002080 002081 TGTTTTCTGA AATTGACTTG TCAGCCCTCT GCAGTCTAGT CTCTGTGTCT ATCGTGCTGT GCTACCAAAA ATGCTCTCTT 002160 002161 TAAAGTAATC TCATTGTTTG GAAGAAAATG AGTTTTTTGT TCTTTAATAT AATAGTGAAA TGATGATCCT GTTTCACTAG 002240 002241 TAGGATAAGG TTCAAAACTA TTAAAATGGA CAAGGCATGT AAAGTCACTT TCTTTTATTT TTATCTTTTT TTCCCCCCGT 002320 002321 TAGAACCTCt ggcagggact gactagccca tgaaacttat ttcttcttcc cgggcacaca gctaaactaa atttcacagc 002400 002401 tttccttgta gttggttata gtcatgtgat gaacttcttt ttttgagaca gagtttagct cttgttgctc aggctggaat 002480 002481 gcaatggcac aatctcagct caccgcaacc tccgcctccc gtgttcaagc gattctcctg cctcagcctc ccaagtagct 002560 002561 gggattacag gcatgtgcca tcacacccgg ctaattttgt atttttagta gagacacggt ttctccatgt tggtcaggct 002640 002641 ggtctcgaac tcccgacctc aggtgattcc cccacctcgg ctttcaaagt gctgggatta cgggcgtgag ccaccgagcc 002720 002721 tggccgtgat taacttctag ccaattaaat atgaatggaa atgatgtgct catttttagg gttaatgaag tcctcctatt 002800 002801 ctcccttact ctttcttcgt caacttgatg cctttgagca tggtgacctt caaaactatg tattggagat gccaaagcca 002880 002881 gaaaagagaa gaatgagtgg ctgaaacagt acttggaaga cagccacccc aattagaaac acccCTTTTT GCACTTACTG 002960 002961 TAAGAGAAAA AATTGAGATT TGAGAATTTA TATGTATAGG AGCTAGAATG ACCATAGCTA GTCCAgaaat tggtacaaga 003040 003041 agtggagtac tgctaaaaca ataacctaaa atatgttaca tcagcttatt tatgatgcag caggtggtag agaatgtgat 003120 003121 ttggaggcta gaaaaaggag gcccatgttt gcagtggcaa agtaattagt aaaactgtca cctgaaataa ttcaaaatca 003200 003201 gatcacctat ctgtttagat tagctccaga ggaaatgatt gaaaagagca aaagtaatac tgtgttgaat tttacatttt 003280 003281 acttttagta aggttttact aaagagagaa actcaggaaa tacttcacag aagtgagagt gtacaggaat atttctcagg 003360 003361 aagggttgga aaagttgact tttataagac ttctaataaa aaaaaaaaaa aaactagaag aggtcttgag tatagttacc 003440 003441 cttgagatta agtcctgcaa caaagatcag gaaaagggtt tggtctttcc attcaaagtc attattttag atggcttcaa 003520 003521 gatagctacg ataaaggtct aaaggaactg gcataggagc aaggcagcaa agcagtaaat taggcttgat aattatgtaa 003600 003601 gaaagaactt tgggtgtagt taccagaagc aaatcaatca gaagactaca tttttagagg aattttatta atcatactaa 003680 003681 atctggctca aatatcattg ttcgggtgtt aaaacagagg gtaactgtcc aaccccaagc ttgcataagt agaaaaatag 003760 003761 agcataaaac cttaacagct ccccagtacc cacacaggat gtggccatgg agaatgatgg acaaaaaaag aacatttcag 003840 003841 aagctcgtat aaggagctgt actaaagact ggacagggag tttctcctga agactagaat tggagtttca tcagaacttt 003920 003921 cttcagtttc aaggagatgg gccgcaaaat gtttatgcag tatttcatca ttattataca tgaatagtat tgctcagtat 004000 004001 cacatttttt ttctgaatga gagaatgtat tatagttatc tgtccctgag ttaccactat atattgggtt tgcagggatg 004080 004081 ggggtgacaa taaagataat ttgtcttttt agttcttagg tcacatctgt acctaatgaa gagaactgca cattttctga 004160 004161 aaatcctaga ctttgagcct gttccagtaa ctggttaaaa ctttagattg tctcctttgg gacagggtat gttctgtgtg 004240 004241 tggaaagaca ggtaaaatac atgtttagtg atcagaatag tagaTTCTTG CAAATGCTAA Attcttctgg ccacacagct 004320 004321 atatttccat gcctctcttg caattaggta tatgggttag gtgtgctgat taggttctaa ccagtggaat gtgagaagtg 004400 004401 atgcactcct attccagctc tggcctatgg aaacatcaca tgagcaatcc aatatatccc actccccatc aacttgaggc 004480 004481 agatgagcaa atttgcactg gaaactatgt gttaaagatg gcaaagccgc aagataggac tcctggtttc ctgaatCTTC 004560 004561 ACTTGGAGGA TACTTGCTTC CCAATTAGAG ACACTTGTGC TAGAGTTTCC TGACTCTTCA CTGGGAGGAT ACTTGCTTGC 004640 004641 CAATTAGGGA CACTTGTGCT ACAGCTCATA CGCATTCTTT TGTGTTAGGC CACTGAGATT TCAGAGCGTG CCCTAATAAA 004720 004721 GACCTGTCCC TCTTTCTCCA GATGCAATCG TTCATTACCT AATTCTAATT TTTATACCAc aggagtaggc ccacaaatca 004800 004801 ggctagccaa agtatcctat cattcagcca tagtgattag ttcaggaatg ggcagattaa caaaactgaa gttaatcaga 004880 004881 gatagtctta tcatttgggc tagcactatc aagaaaaaga cacctgcttc tggaataagc aaaaaaaaaa aaaaaaaaaa 004960 004961 acacaagcta catctggcct ttggtcatca tgtcgagtga acctgcctaa gaatgaaatc ttacagggaa acagagGCAG 005040 005041 TCTCAATGAT ACTGCAGAAG GGGAAGATAT CCCATGAATT GAGAAATATT TCCTGGGTTT CTACTCGATT GAAATTCCAA 005120 005121 GAGGTAAGGG ATAGATACTG CCAGGAAGAC TTGGGAATTC AAAAGAGGAG CTCTCTGAGA CTAGAGTCAC ATCCTGACAC 005200 005201 GGCTCTTCTC CAATGTGCTG GAGTCCTCAG CATCTGCTGG TCTTGATTCA CTGATGGGGG CAACCAGTGT CCCCTTAAGT 005280 005281 GTCCGGGCAG AAACATACTG TACCTTGGTT TTAGAAAGTA GGTTGGCAGG CATCTTTCCT CATTCCCATC AAGGAGTTGG 005360 005361 TACCTTCCAC AGTGTAAGTT ATTTTCTCTG TTCTAGAGCT ACTACAAAGT GCTAGGGAAG GAAAATCTCC TAAAGCAGTC 005440 005441 TGTCATCATG AAGGCCAAAT TATGTAGCAG AAGAGCTTGG AAAAAGATTA AGACGGTGGT GGGGAGGACC TTTGTCCTGG 005520 005521 TGGCTTGAAG CCATAGGGAA AGAGGTTCAC TAAATGCCAA CAAATGCTAA AAAATAAAAA AATAGACAAA ACAGCGAGCC 005600 005601 AGTGGCTTGT GCTCTGCTTT CCACCTGAAA GTTTGCCCAA CATAAGCAAT TATAATCAAG TAGAAATTGA AGCATATGTT 005680 005681 TAAGCAGAGA GGACCAGGTA ACATTGATAA CCACTGTcct cccagccact gccttaatta ggctttcatg agttttcacc 005760 005761 cacattattg caatagtcaa tctccctgcc tctgatccta ttatactcta ctttatcctc cacattgaca cctgagtTAC 005840 005841 TTCTCTACCT TGTAAAAACA Atttatttct gagtacaaaa acactacatg ttcattgtaa aatactaaga aaatacaaaa 005920 005921 aagcacacat accagaacat gcaattctat catctagaga tatccactgt tgacatttta gtACAAACCT TTACACAGTT 006000 006001 GTTTTCTCTG TGTATTTTTA AATGAGAATG CCACTGTTGT ATTTAGCATG Ct |
Predicted Small Protein
Name | NONHSAT096836_smProtein_5012:5245 |
Length | 78 |
Molecular weight | 8955.2287 |
Aromaticity | 0.0649350649351 |
Instability index | 45.1402597403 |
Isoelectric point | 8.95697021484 |
Runs | 14 |
Runs residual | 0.0457368718238 |
Runs probability | 0.0479660332602 |
Amino acid sequence | MKSYRETEAVSMILQKGKISHELRNISWVSTRLKFQEVRDRYCQEDLGIQKRSSLRLESH PDTALLQCAGVLSICWS |
Secondary structure | LLLLLHHHHHHHHHHLLLLLEELLLLEEEHHHHHHHHHHHHHHHHHLLLLLLLLLLEELL LHHHHHHHLLLEEEEEL |
PRMN | - |
PiMo | - |