NONHSAT097048
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097048 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2051 nt |
Genomic location |
chr4+:78078378..78354542 |
Exon number |
12 |
Exons |
78078378..78078659,78079686..78079823,78080520..78080657,78081874..78082124,78082633..78082711,78082802..78082900,78085427..78085632,78100109..78100219,78106250..78106563,78113364..78113420,78353394..78353587,78354361..78354542 |
Genome context |
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Sequence |
000001 GGGCTCGGGG AGGTTTCCGC TGAGGCGGCG GGGGTGCGGC GGTGGGCTGG TCTTCCGCGG CCGGCGTTGC GCCGCGGCGG 000080
000081 AGGGTGGGCG CGCGGGGAGC GGGATGGAGC CGGGGCTGTG AGGCCGAGGC GGCGGTGCCT GGGAGGAAGG GTCGGATGCC 000160 000161 GGACCGGGGG CACCGCTGAG GCGGTGGGTC CCCGACCTGC GAGACAGGTT TGGAAGCCCC CGCTGCGCCC AGTCCGTGCG 000240 000241 GACCGCGAGG CCGCGGGCGG GTGGAGGCGC GTCTCCGGCA CGATGAAGGA TTTGGGGGCA GAGCACTTGG CAGGTCATGA 000320 000321 AGGGGTCCAA CTTCTCGGGT TGTTGAACGT CTACCTGGAA CAAGAAGAGA GATTCCAACC TCGAGAAAAA GGGCTGAGTT 000400 000401 TGATTGAGGC TACCCCGGAG AATGATAACA CTTTGTGTCC AGGATTGAGA AATGCCAAAG TTGAAGATTT AAGGAGTTTA 000480 000481 GCCAACTTTT TTGGATCTTG CACTGAAACT TTTGTCCTGG CTGTCAATAT TTTGGACAGG TTCTTGGCTC TTATGAAGGT 000560 000561 GAAACCTAAA CATTTGTCTT GCATTGGAGT CTGTTCTTTT TTGCTGGCTG CTAGAATAGT TGAAGAAGAC TGCAATATTC 000640 000641 CATCCACTCA TGATGTGATC CGGATTAGTC AGTGTAAATG TACTGCTTCT GACATAAAAC GGATGGAAAA AATAATTTCA 000720 000721 GAAAAATTGC ACTATGAATT GGAAGCTACT ACTGCCTTAA ACTTTTTGCA CTTATACCAT ACTATTATAC TTTGTCATAC 000800 000801 TTCAGAAAGG AAAGAAATAC TGAGCCTTGA TAAACTAGAA GCTCAGCTGA AAGCTTGCAA CTGCCGACTC ATCTTTTCAA 000880 000881 AAGCAAAACC ATCTGTATTA GCCTTGTGCC TTCTCAATTT GGAAGTGGAA ACTTTGAAAT CTGTTGAATT ACTGGAAATT 000960 000961 CTCTTGCTAG TTAAAAAACA TTCCAAGATT AATGACACTG AGTTCTTCTA CTGGAGAGAG TTGGTTTCTA AATGCCTAGC 001040 001041 CGAGTATTCT TCTCCTGAAT GTTGCAAACC AGATCTTAAG AAGTTGGTTT GGATCGTTTC AAGGCGCACA GCCCAGAACC 001120 001121 TCCACAACAG CTACTATAGT GTTCCTGAGC TGCCAACGAT ACCTGAGGGG GGTTGTTTTG ATGAAAGTGA AAGctctgtt 001200 001201 gcccaggctg gagtgcagtg gcccgatctc agctcattcc aacctccacc taccaggttc aagcgattct catgcctcag 001280 001281 cctccggagt agctgggatt acagCTCCTG GACCTGAAGC AGACCTGCAG AGAGGATCAA GTGCAGAGAC AAGCTGCTGC 001360 001361 TGAGATCATC ATAGGGGACC TCTTCTAACA TATGAGTTCC TGAGGAAGTG CTGTGACCTT CCAATGCTGC CACTGGTAGT 001440 001441 CTCATTTCAA AGAGTAAAAT GTGAAAATCC AATGGCAGCA GCTATTGTGA TATGCCAGAC AGCAGGAATT GGGACTAAAA 001520 001521 ATCAAGGGAT ACTTGTGATA ATAGATCCAT AGTACTTTGG AGCTGGAAGA AACCCAGCTT CAAAAAACAG CTTGATTTGC 001600 001601 AGCTCTTCAT TCAAAAAGaa tcccatccag ggtatgacat tgaacttact catcacgtct ctatagtgtc ttctggagtt 001680 001681 tggaactaag acccctagac agcagagcct aagggaggaa tgactctacc aggagacaaa ataatgactc tgttaaagtt 001760 001761 gagatggccg gctgcctcat acctctgatt caaaagtaaa ggagttgctg tactggttag ggcgattgtt cctgacaacc 001840 001841 aaggggaaac tggactgcta cacaaggagg actgaacaga gctgaggctt ccctaatgaa gacattctgc tgtggtcaga 001920 001921 agtttcagca gcccctgagt tcctgcctgt tcctcctgaa agccttccct atctgtggat aatgggcttg ccttgccaac 002000 002001 ttccacaatt gcataaaaca agtccttgca atgaatctca acatgtatta a |
Predicted Small Protein
Name | NONHSAT097048_smProtein_1895:1981 |
Length | 29 |
Molecular weight | 3139.84 |
Aromaticity | 0.142857142857 |
Instability index | 57.0535714286 |
Isoelectric point | 8.90753173828 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.0482070305601 |
Amino acid sequence | MKTFCCGQKFQQPLSSCLFLLKAFPICG |
Secondary structure | LLEEELLLLLLLLHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |