NONHSAT098527
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098527 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2415 nt |
Genomic location |
chr4+:142326326..142328740 |
Exon number |
1 |
Exons |
142326326..142328740 |
Genome context |
|
Sequence |
000001 TAATGAAGGT GATCCAGAAA TATATTGGCT GTCAAAGTTG CATCACTGGC TTGCTTTTTT TTTTTTTTTA ATGCTGGAAG 000080
000081 ATAAAGTGGC TACCTCTGAG ACAAGTTTTT CAAAACTCCA TTTTCCACCA GTTCTGTTGC AATCTCTAGG TGTTATAATC 000160 000161 AAGAAATTAA AAATGCTTAA TCACTGAAAA TTGATCAATT ATTGGTTTGC TTCCACTTCT ACCCAGGTCA CGTAAAACAT 000240 000241 GCATTCGGAC CACAGATTTT CAGAGAAGTG TAGCTCATAA AAATTATTGA AGCTTGTGAA GAATGGATGT GATCATCTAA 000320 000321 ATTACTTAAA ACAACTAAAA GGAAAACTCA AATACATTAA TGATTTTTAT CTTCACATGA ATAAGAAAAG TTTTTTTAAG 000400 000401 TCCATGTTGA TAGAAAATTG TATTCAAGTC ATTAAAAGAG ACATGAGTGC CCAATATTCC TCTCAAAAAG AAAATGTTGA 000480 000481 ACCACAAGAG GTTGTAGCTT TTGGAATGAA GCTAAATGTG ACCAGAAttt tttttttttt tttttttttg agatggagtc 000560 000561 ttgctctatc gcccgggctg gaatgcaatg gcacgatctt ggctcactgc aacctccact tcctgggttc cagcaattct 000640 000641 tgcctcagcc tcccaagtag cactggctaa tttttgtatt tttagtagag acagggtttc accacgttgg ccaccacgaa 000720 000721 cttctgacct caggtgatcc acccgccttg gcctcccaaa gtgctgggat tacaggcatg agccaccgtg cccagccGAT 000800 000801 GACCAGAAAT TTATAAAATC ATCAGGTAGG CCAAAGGAGA TGAAGAATGT AAAGTCAGAG ACTTTTTTAA ATATTAAGGA 000880 000881 TTTTCTTCCT GAAGTAATGC TCAAAATGTC CATTACCTAA GTCTTCAGTT GTAATGCATC TACATTTAAG TATTAATTAA 000960 000961 TTAATTAAGT ATACAGCAAA GAGCTCAGCT GGCTCAAACT GGACATCTCT GGTATCAAAA TATGACTTCC TTGATTTGTA 001040 001041 TGGTAGGCCT AAAcactgat tctcaaccaa gagattgtgc taccttaggg gacttttggc aaaaatatct ggactcactt 001120 001121 tcagatatca ccacttgggg taggaggggg tgtgcttgtg gcatccagtg ggtagaaaag gtgctgctaa atatcctaca 001200 001201 atgcacaaga cagctctcaa cagtgaatta tccagtctga aatgttaata gtgctgaggt tgagaaaccc tgGCCCAGAC 001280 001281 CCAATCTTAA TAGGGCAACT GATAAGAATA GTGTAAAAAA AAAAATTATA AAGGATGGTT TTCAAGAATG CAATAAAACT 001360 001361 ACCACTATAG TAGAAACTGT AGAGTCCATA GAGAAGACAG CTTCTGTCAA TATCACATAA ATGCATATAT GATTACTCCA 001440 001441 TAGCTTAATT CACAGTGTTT TAGCACATAA TGGTGCTTCT GCAGCAATGT TAGAAGTAGC CCAGACTCTG GTTTTCAAGT 001520 001521 AAAAGATAAA CTTCTTGCTG AGAAAATATC ATATTTTATT CTGTGTGAGT GTTGCATTGT TTCATGTGAA GCATCAGAAT 001600 001601 GTGAGTAAAA TGGAAATTCC CATCTTTATA TCTGGCAGTT GATTTTGGCT TGGTCTGAGA GCAGAATTTT TGTATTCTTG 001680 001681 GTATGTCTAG GAGCCAAAAA AGTACAAATA TGATTTAGAC ATTATTTGAA GGGAGATAGT ACTACTGGCA TCACTCTAAA 001760 001761 AATTTTCAGA AGAAAAATTG TTTAGACCTT GGGAAAAAAC AAAGTCAAGA AAATGAATTT CAACAAGAAA CACATTACTT 001840 001841 ACATGATTTA ATAGATAATT TTGGCCCTGA AACTAAGTTT GTGTTTCCTT AAAATTTATT ACTTGAGGAT ATGAGAGACC 001920 001921 AAATTTGTAG CTGATATTGA CAACAATTTA TTGTGGAGGC AAGGATTATT GATATTCTTC TTGTAGTGGG AAAAACCATA 002000 002001 CAATTGTAGT TGTCTTCCTT GAATTACTGA AATTAGAATG TTTCTGAACT AAAAGTCTGT TGGCAGCAGA ATTGTTCTTC 002080 002081 TTTGGCCTTT GTGTAATGTG ATCAGCCTAT TTTTTTTTTT TTTTTGGTAT TGGAAATTTG TTAAGACCTC TGTTAGCATT 002160 002161 GTAAGATTTA CCTGCATTTT TGCTGAAACA CTTAAGGACT AAATATTATG TGCAAAATTA TTTTATTTTA GAGGTGAACA 002240 002241 ATCTAAGAGG TGACTAGCTT ATTTGACAGC ATTGTTGAGT CAGTTTAGCA TTATGTACTA TCATTAAAAT AACGAACAAT 002320 002321 CTATATAGTA TTCAGAATAT TTAGAACATG TACTAGGAGT CCACTCTTCT TCAATATACC TGTTGGCCTT ACCTGCCTTG 002400 002401 GATTATTGAT CTGTG |
Predicted Small Protein
Name | NONHSAT098527_smProtein_587:736 |
Length | 50 |
Molecular weight | 5478.231 |
Aromaticity | 0.102040816327 |
Instability index | 61.0163265306 |
Isoelectric point | 11.6996459961 |
Runs | 7 |
Runs residual | 0.019194704909 |
Runs probability | 0.0166300754536 |
Amino acid sequence | MARSWLTATSTSWVPAILASASQVALANFCIFSRDRVSPRWPPRTSDLR |
Secondary structure | LLLLEELLLLLLHHHHHHHHHHHHHHHHLEEEELLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |