NONHSAT099106
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099106 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1839 nt |
Genomic location |
chr4+:166420526..166425300 |
Exon number |
2 |
Exons |
166420526..166421275,166424212..166425300 |
Genome context |
|
Sequence |
000001 CAAAATTTTG CTTCTTGAGG TTTAGATAAG ATAGGATAGA CTGGAGTATG CTGCCGTAAG AAGCAACTCC AAATCTTAGC 000080
000081 GTTCTAACTT AATAGTAATT GATTTTTCAT GCAAAGTCTG TAGGTCTACG TAACTCTCCA GGAACTTTGC GCTGCATGCT 000160 000161 GTGACACAAT TATGTAGAAT GTTTCCACGT GCGGTTCTGC CATCTCAGCA CAAGGTTTCC TCAGTCTCCT GTGTTGGTCG 000240 000241 CAGAAGAAGA TAACTGGGGC CACTACTGCC CACAGCCCAC AGGTCAGAGC TAGTTACATG GCCTTGCCTA ACCACAATGT 000320 000321 TTGGTAAGCA TTGTCACTGC CGTAGTCCTC TCTCTGGTGC CAACACAACT TTGCTCTCCT GTTTCCAAAA GTAGGactca 000400 000401 ctttgcaagg gagacgattt acagccacat caaatcatgg ctttgagctt caatttcagg atctctgagt gatctcacaa 000480 000481 tagtctctat gtcaggtctg tacatggcca gtcctgtttc agggacaagt aaactaagaa gacaggtaaa atgcatccct 000560 000561 cacccgcagt gtgcagtggt agaacaggat caagacaatg tgaggaaaca cttccacagt ggtgaggaat gagaggggcc 000640 000641 cagcattcag gcctgcagca actcagaaat cttgccgagc aaatacttta tgggcctcct attttggggg tggaaaatgt 000720 000721 ttctggtttc agaattcatt ctacactttg TGGAGTTTCT GCCTCAAAAA TGTCAAGATA GAATATACCT AAGCTTTTAT 000800 000801 GTCTCACCTT GTAAATACGC TCATCCTGGT TTTGCTGTTC TTAAGTAAAC ATCTTTCTAG GCACTTACAA ATGGTCTGAT 000880 000881 TCTTTACTCT TTCATTTTTT TCTCCTAGAC TATCAGCCTG TGAATCAACT CAATCATGAC TTGAATTTCT AGGGTAGTAC 000960 000961 ATAATTTTAG TTTTAATTTA AATCATTGCA AAATTCCCTG AGGATCAGTG TTTTTAAAAA CAATTCAAAG ATTTGGCTTA 001040 001041 GCTGGGTTAA GGGTCATCAG TGTGACCCAA GCTGATATTG ACTATGGTCT GTAATGATGA CTCAGAAAAG AAAAATCCCC 001120 001121 CTCGTGAAGC TTACTGAAAA TTTCCATGAT GTCAGGGGCC ACAAGGCTGT AAGCTTTTGG AGGGTGTCAT AGTTTCTTAG 001200 001201 ACCTCTTACA CATTATCCTG TCTTAGCTCT TTTAGTATTC TACCTCCTTC CTTTTCCTTT CTCCATTCTT TCCTTTTGAA 001280 001281 GATTCATTCA GCAATTACTA AGTGCTCACC CTGTCTTCTC TACCAGGGAT TCCAGCAGCA CTTTGCTATG GTCTATGGtc 001360 001361 accaccacca tcactggaat catcatcacc atcactacca tcctcaccat gactgagtgt gtgtcgtatg ctgcactcag 001440 001441 cgctagacac ttgaaatgca gtgttttgaa acccaactac aatattttaa ggtgagaagt gatgcagctg tcctatttaa 001520 001521 cagatgaaga aagagattca gaatttaagt taaatttccc acttcatacg gctgaaatgt ggcagagcaa gattacagcc 001600 001601 tacgtctgcc ttacttctag tccatcctgt ttccacctta cctcactTCT TTAGCATGGC CTGGAAAGAA TTGTGTACTT 001680 001681 CTTCATTAAA TGTATCTTTG TTTTATATTC TTTTGACTAT TCACACATGC TGATTGCTAT ACTTTGGGCT TCAGGGGAGT 001760 001761 ATTTATTACC TGTTTTGAAA GAAGGCCCTT TAAAGATGAT TTTAAACATT TTTCAAGTAA ATGCAATAGC TCTTGTTTA |
Predicted Small Protein
Name | NONHSAT099106_smProtein_689:847 |
Length | 53 |
Molecular weight | 6232.406 |
Aromaticity | 0.230769230769 |
Instability index | 44.0848076923 |
Isoelectric point | 8.71160888672 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0298533827945 |
Amino acid sequence | MGLLFWGWKMFLVSEFILHFVEFLPQKCQDRIYLSFYVSPCKYAHPGFAVLK |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHLHHHHLLEEEEEEEELLLLLLLLLEEEEL |
PRMN | - |
PiMo | - |