NONHSAT100200
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100200 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3000 nt |
Genomic location |
chr5+:6582251..6588612 |
Exon number |
5 |
Exons |
6582251..6582379,6582533..6582714,6583716..6583914,6585887..6586140,6586341..6588612 |
Genome context |
|
Sequence |
000001 AACAATAAGA AATTAAGGGT TCGGGAAGGA GAGGGGCCAC CCTGTGCTCA CCCCCACACA GCCCTGCAGG AAAACCCAGT 000080
000081 GAACGGTGCC CAGGTTGGAG TCCGAAGGTG ACTGATTTGC GGCAAGGTTT TCTCTCTTCC TCTGTAAAGT GGAGTCCTTC 000160 000161 ATCATTCATC GCAAGTAGAC AACTCGCTTC CTAATGCCTC TGCATTAAGG AGCCAGGCGC TGCAGCTCTT TGGTACGTGA 000240 000241 CCTCAAATAG ATTCATGCGT CCTTCTGCTG ACACGGTGGC AGAGGAGAGG GAAGGGTCGC GCCTGGTGGG GGCCTGAGAG 000320 000321 CCACCGGGCT GCGGTGCGCG AGTGTGGACA CCGCCCCGCC TTCTGCGTCT ACAGCCCTGG GTTCTGGGAC CTTTGGAAAC 000400 000401 CGCTTTGGAC GAAGCTGAGC ATCTCTTTCC CCACGCTGAC CTCCCCCATA GACTCCGGAT GGGAGTAAAT GAGGCTCCTG 000480 000481 GGAAATCCAG AAACTCTAGA GAAGCTTGTT TGCCAAACCT TGCTTTGGGC GGTGGAGACA GAATATCATG TCCCAGATCA 000560 000561 GCGTGTGGTG ACTGTGGAGG CATTTACACA CAGCACACTC CAGCTCTGCC ACTGGGCCGG CTGAGGTGGC TGCGGTACAC 000640 000641 GGCGCCCATC CTGAGCCCCA GGTTCCTCAC ATGTCAACAG CATGAAAAGT GCCTCTAAGA CATCCACAGG TGTGCAGTGT 000720 000721 TAAAGCAGGC AGCGCCTCAG CTTGGTTAGC TCCCTTAAGG ACTGCGGCTC CCTTAGGACA AGGCTCTGTC CCTCAGAGCA 000800 000801 CTGAGTGCGA TCTCATGCTG GCATCTTAGA GACATTGTAT TCACCAGGTA AGATGGATTC ACATCTGCTG GGTGCACGAA 000880 000881 CACTTCCTCC TTCCTTGCCA CCAGCCAGCA TCACAACCAG CCTGGCCAGG CTCCCGTCCC AGCCCAGCCT AGCAGCTAAC 000960 000961 CCCAGCTCCA TCCCCCAGCA AGCCCCTCTG CCTGCACCTC AGCTTCTTCA TGGAAGACGA GTCAGGTCAT GATGCCACCA 001040 001041 GGGAGCGTGT TTCCATGTTG AACTGAGACA CTAAGCCCTT GACAAATGTT GGCCAAGAAA AAAAAGGGGC TCCAAGAGGG 001120 001121 GAGCTGTGGC TCAGGTAGAA GACGGTGAAT GAGCATTGCC TGAATCAGAG TTAGCTACTC TGGTTACACA GGTGTCCCCG 001200 001201 GCAGGTTGGT CAAAAGCCCT TCCCTGAGTC CCGTGATAAG TGTGGGGAGG GAGGCAAATC AAAGACCCCT ACACACCTCC 001280 001281 TGCATGGATG GCCAGAGCGC TGGTCCCACC TCCTTCCTTC CAAACTGCAA CCCCGATCAG CACAGCAGAG AAGTCTCCTG 001360 001361 TGGCAGGGAC CAGTAATTCA GTGCTTCCCC TGGAGAGTCT GGGATTGCAC AGAACACCAG AGGCTGGGGA TTTATTTGTT 001440 001441 CACCAACATT CATTCAACAA ACACTTACTG AGGCCAACAC TGGGAATGGA GACGAACTTC CCTGTCCTCA TGGAGCTTGC 001520 001521 TTTCAAAAGG GAAGGAGGCA GACAGTAAAC AAAACAAGCA AGTCAATATA CAGCATGATG CAGAAAAGGT GTGATGCCAC 001600 001601 CCTCTTGCCT GAGTTTATAA CAAGCAGATG ATGTTGTCCT AAGAATTAAT TTCAGCCGGT GAAAGAGTAC AGGCAAAAAA 001680 001681 CGTGGTCTCG GACTTTCCGG TGATGCTTAA GAACATAGTT GCAGTTTTTG TTCTGATTCT TTGTGCATCT CGCGCTAATG 001760 001761 AAGGATTCTG CCATGATTGC CACCTCTGGA GACGTCACAG CCAGCACAGC CATGACCAGG GATGAACTTG GCCATTGTCC 001840 001841 AGCAGCACCA TGGGAGGACC AGCTGCTGTA AGTGAAGGTC ATCATCCATC TGATTTGCTG GCTTTTTGCA ACTACTGCGG 001920 001921 TGGAAGTCTT AGAGTAGCCA CCTTCTCTGT ACTCAGACCT TCACTTCGCC AGATGTCAGC ACAGCAGTGT CAGCAGCTTC 002000 002001 GTCAAACACA AACACCACCA CCTCTCTGGA TCAGAAGCAC ATGGAAAGCC CACCTTGCAA GAAGACCCAG CTATTCCAAA 002080 002081 AGTACCCATA TCCCTGTAGC ATCCTCTTAG CTGAATGTCT CTACTCCTTA AACTTGTACC ACTTTGAAGA GTAAAAATTT 002160 002161 AAATTCATTC ATATTATCAT TTTTTAGTTT TTAGTATAAG TGGAGCTGTT TATCGGCCAT TTGTATGTCC TTTTCTTTTT 002240 002241 TTTGCAAATT ACTCCTTTGC CAAATTTTCT CTCAAATGAC TCATCTTTTT CTTATTGATT TGCAGAAGCT ATTTACATAT 002320 002321 TATGGATGTG GGGTGTCTAA CATACACAGC AAATACTTTG TCCCAGTGTG TCACTTTTTA AAAAAATTCT TATAATGTCT 002400 002401 TTCATCTTTA AAAAATTATT AAGCTATTGT GAGCTTTTAT GCCTTTTCAG TTTATTTTCT TACATAGATA ATTATATGAA 002480 002481 GTGCAAATAG GGGCAGTGTT AGTCTCATCT TCCCAAGGCT GCACCTCAGA TGTGGAATGT TGACAGCAAC ATCTGTTACC 002560 002561 TTGTTTCTGT TTTTAGGATT TTAGCGTTAA GGCCAGGCAT AATGGTTCAT GCCTGTAATT CCAGCACTTT GGGAGGCCGA 002640 002641 GGTGGGCAGA TCACTTGAAG CCAGGAGTTC AAGACCAGCC TGGCCAACAT GGAGAAACCC TCTCTATTTT TAAATACATT 002720 002721 TAAAATGTTA ACAATTAAAA CAAAATATTT TACCGTTAGT ATGATGCTTG ATACAGGATT TCTGGTACAT ACGCCTTATC 002800 002801 AAATTAAATA AGTTTCCTTT TACTCTTGTT TATTGTTATT TTTTAAAATA AGGAATGAAT CTTGGATTTT AGTGTATCAA 002880 002881 TAATTATATT TTATTCTTTA ACTTCATAAT ATTCCTTATA ATTCCTTATG TCATATTAAA GATGTAAATT CATATATATT 002960 002961 TTATCATACA AATGATTAAT AAATGTATAA GCATGTCATT |
Predicted Small Protein
Name | NONHSAT100200_smProtein_458:697 |
Length | 80 |
Molecular weight | 8581.8372 |
Aromaticity | 0.0506329113924 |
Instability index | 74.4607594937 |
Isoelectric point | 9.14752197266 |
Runs | 15 |
Runs residual | 0.0495925091035 |
Runs probability | 0.025089795678 |
Amino acid sequence | MGVNEAPGKSRNSREACLPNLALGGGDRISCPRSACGDCGGIYTQHTPALPLGRLRWLRY TAPILSPRFLTCQQHEKCL |
Secondary structure | LLLLLLLLLLLLLHHHLLHHHLLLLLLEEELLLLLLLLLLLEELLLLLLLLLLLLEELEE LLLLLLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |