NONHSAT103062
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103062 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
722 nt |
Genomic location |
chr5-:102766107..102797044 |
Exon number |
5 |
Exons |
102766107..102766336,102768189..102768324,102779453..102779641,102781520..102781562,102796921..102797044 |
Genome context |
|
Sequence |
000001 ATGCACAAGG AATGCACTGT CCTGTGCTCT GTGGGGTCAC AATACAAAAC AATAGCATTT TATGGAAGAA GTGCATTCCC 000080
000081 AAGTGCTGAT GGAATTCAAG GCTAAACTTG ACGAAGGATG GCAGGTGGCT TGAGGCAATG GACAAAGCGG CCCGTCTTGT 000160 000161 CCGCCAGAGC CATGTCTGGG AAGATGTTAC TCTGCACAAC AGTAGCCTCC CACCTCTGGC TATCAAGAAC CCAGGGTGTC 000240 000241 TGGGTCTTCT GCACCAGCTG GATATAAACA CGGACATGTG GGTCCTGCAC TATTGCATCT TGAAAGGATG GTTGGCTTGT 000320 000321 ATTTCTATGA TAACAATCGC TCTACCCAAG CCTCAGGTGG TCTATATCTG CAAGGATATA GGGTGAGTGA ACAGACCCTT 000400 000401 AGTTCCAAAC AATTAGTAAT TGAACTCTAG CCTCCATCCG AAGAGTTCAA GACTTTCTAT TTCTGTGCGG AAAATGAAAC 000480 000481 AGAAAACCGA CGCTGGATTA CAGCTCTGAA AGCATTTATC AAAAAAAATG GCTTCCTTTG CATTAGGCTA TTCAAGGCTT 000560 000561 TATGAATTGA CCTCTCGGAC AAGCCAAAAT GCGAAAGAGA CCCTAACTCT TAAAAGGATC TACAAACTCA TCACCAACTT 000640 000641 GTAGAAACAA ACAAAATGTC TATCATTATA TAACTTTTCA AATGAATGTT CTTCCAATGT ATTAAAACTG TGTGATGAGA 000720 000721 TT |
Predicted Small Protein
Name | NONHSAT103062_smProtein_137:385 |
Length | 83 |
Molecular weight | 9220.9171 |
Aromaticity | 0.0609756097561 |
Instability index | 42.6329268293 |
Isoelectric point | 7.71710205078 |
Runs | 11 |
Runs residual | 0.00175535846268 |
Runs probability | 0.0487947840888 |
Amino acid sequence | MDKAARLVRQSHVWEDVTLHNSSLPPLAIKNPGCLGLLHQLDINTDMWVLHYCILKGWLA CISMITIALPKPQVVYICKDIG |
Secondary structure | LHHHHHHHHHLLLLLLLEELLLLLLLLLLLLLLLLLHHHHLLLLLLHHHHHHHHHHHHHH HHHHHHHLLLLLLEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHHLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTT TTTTTTTTiiiiiiiiiiiiii |