NONHSAT103697
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103697 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3247 nt |
Genomic location |
chr5+:130748048..130751330 |
Exon number |
2 |
Exons |
130748048..130749481,130749518..130751330 |
Genome context |
|
Sequence |
000001 taatcccagc tactcgggag gctcaggaga atcacttgaa accaggaggc ggaggttgca gtgagccaag atcacaccac 000080
000081 tgcactccag cctgggcaac aagagcgaaa ctccgtctca aaaaaaaaaa aaaaaaaaaa aaagaaaaag aaaaaaaaTT 000160 000161 AAAACAATTG TAAAAaggtt catccatttt gcagcatgtc agaatttctt tccttttcaa ggttaataat gtttcattca 000240 000241 ttgtatgcat ccagcatttt atccattcat ccactgatgg gcacttgggt tgcttccacc ttagccattg ctgataatat 000320 000321 tgctatgaac aagggtgtac aaatatctct ttgagaccct actctcaatt cttttgcaca tatatacata tatatatata 000400 000401 cacatatatg tatatataca cacacacata tatatacaca tatatgtata tatacacaca cacacatata tatgtaccca 000480 000481 gaagtggaac tgctggatca tatggtaatt ccatgtttaa tattttgagg aacttacata ttattttcca aagcagttgc 000560 000561 attacttaca ttcccatcaa gagtgtacat gacttctaat atctctacat gctctctaac aattgttatt ttcaattttt 000640 000641 ttgacagtaa ccatcctcat gggtgtgagg tggtattttg ttgtgatttt gacttgtgga ttagtgacac tgaaccactt 000720 000721 ttcatgtgct tgttggccaa ctgttatctt ctttggagaa atatctattc aaatctttta cctttttttt aaagacaggg 000800 000801 tatcattctg tcacccaggc tggagtgcag tggcaaaatc agggctcact gcagcctcat ctcttgggct gaagcgatcc 000880 000881 tcccacctca gcctcctgag tagctgggat tacaggtatc tgccaccacg cctggctaat ctttaaattt tttgtggaga 000960 000961 cagggtctca ccatgatgcc caggctggtc gtgaactctt gggctcaagt aatcttcctg ccttagccta ccaaagtgct 001040 001041 gggattctag tgtgagccac agtgctcggc cATTTTTGCT GCCCCCAACC CCtttttggc agagtctccc tctgtcaccc 001120 001121 aggctgaagt gcagtggtgt gattacggct cactgcagcc tcaacctccc aggatcaagt gacgctcctg aatggcctcc 001200 001201 aaagtagctg agactgcagg cacgcgcctc catgcccggc taatttttaa aatgttctgt agagatgggg tctctctatg 001280 001281 ttgcccaggc tagtctcaaa ctcctgaact caagatatcc tcctgccttg gcctcccaaa gtattgggat tacaggcatT 001360 001361 GCTCGACCTT CTGCCCATTT TAAATTGGGT TTTCTGTTGT TGACAGAGAG attttatttg ataataattt aaatttttga 001440 001441 aatatgtatt ttaaatgtta tataaaatGC ATTTCAAGTA TTCCAGTGTA AAATATACAC TGTGCTCTCC CAATCAGAAT 001520 001521 GGAATGGACT TTATTTGAAC CCCTAcagat aacaatattg tcattaaaaa ttaggaaact gaaatttaga aaggatgagc 001600 001601 accttatcca aCAGGACACT GAATTTTTCA GTACTACCTT CAGAGATCAC TGAACTGTAG CCTgtttttg tctaggctta 001680 001681 actagggaag aagccacttt cgatctcacg caaatggtta acagaatcta tttcctgtgg ctggggagct gagggctctg 001760 001761 gcttcttgct gactattggc tgcagtcctc ccttagctcc tagaggcctc ctgcagttca tgtccccatg tgcctcctca 001840 001841 acatgtgcac ttcattaagc caaggagagc ctagagctag tttgctagca agatggagtc ttatacagtg taacataatc 001920 001921 gtgcagctac attacaccac ctttgccatt ttctattgct gtgaagcaac tcacaggtct caatcataac caaggggatg 002000 002001 atacagtaga aaatggcaaa gggcatgact actaggaCAC CAGGgtggca gactgtattt ttcaaaaaca gccacagcaa 002080 002081 tattctctga catggtcttc tAGAACCTTG TTACTTTTTA TCAACAATTT CCTCTGCTTC CCTGTCACTG AACCTGGGTG 002160 002161 ACACACTGTG atacagcttg cctggctctc tcttttgcga tacttgccct tgaaactcaa cctccatgat ctgaggcagg 002240 002241 ccaaaacagc ccatatggag agatcacatg gagaggttca cgtggtcagg aatagaggcc tcaaacaaca gccagcatta 002320 002321 actctcagct atgagctttc aaataattcc tgtcctgagc ctgaatcttt cagctaaggc cttaatcact gtggagcaca 002400 002401 gaaaagccag cttttctaaa ccctgtgcaa attcctgaac aataaacaag cataataaat ggttgtttca tgccactaaa 002480 002481 ttttgggttg atttgttaca cagccatagt aattgggaca TGttaataga ataaaggagc aagaacccac aattatttca 002560 002561 atacatgcag aaaaagcatt tgatagagtc tgacatttat taataattaa aaagttccag caaattataa atcgaaggga 002640 002641 actttcttaa tctgacaaag agttaataca taaaacttac tgcacacagt gtatttattg ttgacagttt ttctctatca 002720 002721 tcacttctat tcattatatt ggaagttctg ggtaactgaa aaaataaaag gcataagaat tagaaaggaa gaaatagaac 002800 002801 tgcctttagc tgcagattac atgtctatat agaaaatctg agattattat tattattagg attcagtgag tttggtaaga 002880 002881 ctgttggaca ctggaacaac attaaaaaat caattttatt tctatttgac aaaaaataat caaagtctgg gcacagtggc 002960 002961 tcgtaagtgt aatcccaaca ctttggaaag ccaaggcagg agaatcactt gagcctagga gttcaagacc agcttgggca 003040 003041 aaattagtag accccgtctc tacaaaaaca ttaaaaaatt agctgggtcc atgtggtgtg cacttgtagt cccttctacc 003120 003121 ttggaggagg tcgaggctat agtcagctgt gattgcacca ctgcactcca gcctgggcaa cagagcaaga aaccatctct 003200 003201 taaaagagag aataattaac aactgaaaat ttagaagcta ctattta |
Predicted Small Protein
Name | NONHSAT103697_smProtein_407:598 |
Length | 64 |
Molecular weight | 7522.5707 |
Aromaticity | 0.206349206349 |
Instability index | 63.8904761905 |
Isoelectric point | 8.79107666016 |
Runs | 8 |
Runs residual | 0.0179786200194 |
Runs probability | 0.0612303479951 |
Amino acid sequence | MYIYTHTYIYTYMYIYTHTHIYVPRSGTAGSYGNSMFNILRNLHIIFQSSCITYIPIKSV HDF |
Secondary structure | LEEEEEEEEEEEEEEEEEEEEEELLLLLLLLLLLHHHHHHHHHEEEEELLLEEEEEEEEL LLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL LLL |
PiMo | oooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiii iii |