NONHSAT104298

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT104298

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1025 nt

Genomic location

chr5-:141666534..141672542

Exon number

4

Exons

141666534..141666557,141666622..141666668,141666680..141667050,141671960..141672542

Genome context

Sequence
000001 GGCTTATGGT AGGTGCTTAA TAAAAATGTG TTGAATGAAC AAATGAACAA ATGAATGAAT TTACTGGGCG TTCATGCACC 000080
000081 ACGGCACTGT GTAAGGCACT TTACATATTA TATATACATT TGTTCATCCT CACAATTATT ATCACTACAA AGTGACTCCT 000160
000161 CCCTTTTTTT TTTGAGACAA GGTCTTGCTC TGTCACCCAC TCCTGCTCAC TGCAGCCTTG ACCTCCCAGG CTCAAGTGAT 000240
000241 CCCCCAGCCT CAGCTCCCTG AGTAGCTGGG ACTACAGGGT GTGCCACCAC ACCTGGCTGG CTAATTTTGT TTATTTATTT 000320
000321 ATTTATTTAT TTTGTAGAGC TGGGGTTTCG CCATGCTGTC CAGGCTGGTC TCGAACTTCT GAGCTCAAAC GATCCGCCCA 000400
000401 CCTTGACCTT CCAAAGTGCT GGGATTACAG GCATGAGCCA CTGTGCCTGG CCCATGTGAC TCCCATTTTA AAGACAAAGG 000480
000481 AAACCAGGTT AAACTCTGAG CTTTGCACAG CAGAGAGAAA CTTCCACATG CTGCTCCCTC TGCCTGGAAT CCCCTGCCTC 000560
000561 CTATTCATTC CTACTTGATG TACTTTCAGC AAACAAAGCC CCCAGGGCAC AGCTGGGGAG AGTGAGGCTG AGGAGTGTTT 000640
000641 GCAGGAAAGG ATAGGAGCCA CAGAGAAGGG CCTGGCCATG GGTCGGACAG TTCTGCTGTA CATTCACAGG CTCCACTGTG 000720
000721 TACCAGGCCC GGCTGGTCAC TGAGCACATA TAGATTAACT TATGCCTAAA GATTGTTCTC TTCCTTCAAA AACTAGCAGG 000800
000801 TGGGCCGGGC GCGGTGGCTC ACGCCTGTAA TCCCAGAACT TTGGGAGGCT GAGGCGGGCA GATCACAAGG TCAGGAGTTT 000880
000881 GAGACCAGCC TGACCAACAT GGGGGAAACC CTGTCTCTAC TAAAAATACA AAAGTTAGCC AGGCGTGGCG GCCCCCCAGC 000960
000961 TACTTGGGAG GCTGAGGCAG GATAATCACT TGAACCCGGG ACCGTCTCAA AAAAAAAAAA AAAAA
[back to top]

Predicted Small Protein

Name NONHSAT104298_smProtein_50:154
Length 35
Molecular weight 3906.7187
Aromaticity 0.117647058824
Instability index 54.2676470588
Isoelectric point 8.80328369141
Runs 4
Runs residual 0.0685033507074
Runs probability 0.0207339692634
Amino acid sequence MNEFTGRSCTTALCKALYILYIHLFILTIIITTK
Secondary structure LLLLLLLLHHHHHHHHHHHHHHHHHHHHEEEELL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL
PiMo ooooooooooooooTTTTTTTTTTTTTTTTTTii