NONHSAT104799

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT104799

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1718 nt

Genomic location

chr5+:157912198..157961446

Exon number

7

Exons

157912198..157912382,157922269..157922781,157929676..157929983,157930160..157930400,157932710..157932802,157942002..157942094,157961162..157961446

Genome context

Sequence
000001 GTTGCCATGG CAATAATCTG CAATTGTGCA GAAAATCCAC AGAACTCGTG AGCAACTCCT TAGTGGATTG GGCTGAAAGA 000080
000081 AAATCAAACC CGTGAAAGCC CTGAATTGAT GTGGTTATGA AAGCGCATTG GCCAAGCTGG CTTTCCTTCC TCTGACCCCC 000160
000161 ATCTAACTAT GGTGAACGCC CTCGTggttc aagatggggg gcccctgtta ttgcatcttc acacatgatg tccaaagcag 000240
000241 gaagacagga agagaagcaa aaagggattt cttctttggc tactatctct tttattgagc aggataaacc tgcctcagca 000320
000321 gactgctcct atgtttcact gactgtgagt cacatgattc atacctacac aagtcactag gaaagagcag tagagatgcc 000400
000401 acagttgcct tagcctggct ggatttgttc cctcaggctg gACCCAGAAC CACCTGATAA AACTCAGGAT TTAACAAACT 000480
000481 AAGAAGGATG CCAGCTCCAG GAATGGGCTT AAGGAAACCT ATCTATTTGC TTAAGGATTG AGCTTGCCGT CCTGATCCAG 000560
000561 CCAACTCACC AACTGTGCTC CTTCCATTCC AGTATTCTCT CCCAGGAAAA AATTTTTCTT CTACTATGGT TCTGGCTTTG 000640
000641 TGATCTGTGT ACATTTAATC ATTCGTGCAG AGCTTTAAAA TTTATAGTGT GCTTCCATGC TTTTATTTTT TTCTACACTA 000720
000721 GTCCCACAGG TCTAAGAAAG TCAAGGACTT GATATTTACC ATTCATTGGC TCTACACAAA TGGGGATCTG CACTCAGAAG 000800
000801 CCACAGAAAA AGAAGAAAAT GCAGTTCACC ACCTCCCAGC AGTCCTGGTG GTGTAGGAGG ATGCGCCGAG GCCAATCTTT 000880
000881 GATGGCTGCT GGTTACTTCC TCATGAGCAG TGTTAGGCTG GGGACAGCAG GCCGGAAAGG AGTGCTTGGA GAGTGTCTTG 000960
000961 ACCTTCACAG ATGTCTTGCA AAAGGAAGTC AGTATATTGC GTATCTGTGA TCGAATGGCA CACATCTGTG AATAGACAGC 001040
001041 CACATCTCTG CTGCCAGAAT ACAGCTGCTG AGGTGTTTGG GGCTTACTTG GAGAAATGAG GACATTGATC TGGGTGAATG 001120
001121 GTAGTAGCTG TACACATACA AAGTACTGTT CACTTCTTTG CTAAGGTTTT ATGTACACTC TGAGGATATC AGAGAATTCG 001200
001201 GAGAAAATCC ATGGCACAGA TTGGATGCAT AATACATGTA CGTACTTcct ggggcttagg gagttcccag aatgtgggtc 001280
001281 ttttggtttt aacgccaaca gagttccagg aaaaccgtca tgaattggtc accctaggga CCTGTTTCTC ACACCGAAGT 001360
001361 TCATGAAAAA GCCAACCCCA TAAGGAGCCA ATCTTAGGAG CCCTAAGCAA GTGCTGCCAG TTACAGAGAC AGCTGGGATG 001440
001441 AGGCTCCCAG GCTCCTGATA GCAGGTAGAG GAGAGAACGA GACCGCAAAG AGGGAAGCCG AGAGGAGTGA TGAAGACCCT 001520
001521 GGCCCTACCA TCTACTCAGG CTGTCTTTGC AGCCACACTG TGAGCCCAGG CTGGTTAACG CTTCCTCCTG GAGGAGAAAA 001600
001601 GCTAAGAGAG AAAACAAAAT CCATGCAGCG CGCTCCCCCT CGGCCCCTCC TCTCTGTCTC CTCTGTGCGC TAACCTCCAA 001680
001681 TGCCCTGCGG GAACCAATTA CAGTATTCTA ATGAGTGT
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Predicted Small Protein

Name NONHSAT104799_smProtein_779:1009
Length 77
Molecular weight 8677.2375
Aromaticity 0.0921052631579
Instability index 62.3631578947
Isoelectric point 10.3689575195
Runs 13
Runs residual 0.0296430732002
Runs probability 0.0333387686329
Amino acid sequence MGICTQKPQKKKKMQFTTSQQSWWCRRMRRGQSLMAAGYFLMSSVRLGTAGRKGVLGECL
DLHRCLAKGSQYIAYL
Secondary structure LLLLLLLLLLLLLEEEELLLHHHHHHHHHHLHHHHHHHHHHHHLEEELLLLLLLLHHHHH
HHHHHHHLLLEEEEEL
PRMN -
PiMo -