NONHSAT104799
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT104799 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1718 nt |
Genomic location |
chr5+:157912198..157961446 |
Exon number |
7 |
Exons |
157912198..157912382,157922269..157922781,157929676..157929983,157930160..157930400,157932710..157932802,157942002..157942094,157961162..157961446 |
Genome context |
|
Sequence |
000001 GTTGCCATGG CAATAATCTG CAATTGTGCA GAAAATCCAC AGAACTCGTG AGCAACTCCT TAGTGGATTG GGCTGAAAGA 000080
000081 AAATCAAACC CGTGAAAGCC CTGAATTGAT GTGGTTATGA AAGCGCATTG GCCAAGCTGG CTTTCCTTCC TCTGACCCCC 000160 000161 ATCTAACTAT GGTGAACGCC CTCGTggttc aagatggggg gcccctgtta ttgcatcttc acacatgatg tccaaagcag 000240 000241 gaagacagga agagaagcaa aaagggattt cttctttggc tactatctct tttattgagc aggataaacc tgcctcagca 000320 000321 gactgctcct atgtttcact gactgtgagt cacatgattc atacctacac aagtcactag gaaagagcag tagagatgcc 000400 000401 acagttgcct tagcctggct ggatttgttc cctcaggctg gACCCAGAAC CACCTGATAA AACTCAGGAT TTAACAAACT 000480 000481 AAGAAGGATG CCAGCTCCAG GAATGGGCTT AAGGAAACCT ATCTATTTGC TTAAGGATTG AGCTTGCCGT CCTGATCCAG 000560 000561 CCAACTCACC AACTGTGCTC CTTCCATTCC AGTATTCTCT CCCAGGAAAA AATTTTTCTT CTACTATGGT TCTGGCTTTG 000640 000641 TGATCTGTGT ACATTTAATC ATTCGTGCAG AGCTTTAAAA TTTATAGTGT GCTTCCATGC TTTTATTTTT TTCTACACTA 000720 000721 GTCCCACAGG TCTAAGAAAG TCAAGGACTT GATATTTACC ATTCATTGGC TCTACACAAA TGGGGATCTG CACTCAGAAG 000800 000801 CCACAGAAAA AGAAGAAAAT GCAGTTCACC ACCTCCCAGC AGTCCTGGTG GTGTAGGAGG ATGCGCCGAG GCCAATCTTT 000880 000881 GATGGCTGCT GGTTACTTCC TCATGAGCAG TGTTAGGCTG GGGACAGCAG GCCGGAAAGG AGTGCTTGGA GAGTGTCTTG 000960 000961 ACCTTCACAG ATGTCTTGCA AAAGGAAGTC AGTATATTGC GTATCTGTGA TCGAATGGCA CACATCTGTG AATAGACAGC 001040 001041 CACATCTCTG CTGCCAGAAT ACAGCTGCTG AGGTGTTTGG GGCTTACTTG GAGAAATGAG GACATTGATC TGGGTGAATG 001120 001121 GTAGTAGCTG TACACATACA AAGTACTGTT CACTTCTTTG CTAAGGTTTT ATGTACACTC TGAGGATATC AGAGAATTCG 001200 001201 GAGAAAATCC ATGGCACAGA TTGGATGCAT AATACATGTA CGTACTTcct ggggcttagg gagttcccag aatgtgggtc 001280 001281 ttttggtttt aacgccaaca gagttccagg aaaaccgtca tgaattggtc accctaggga CCTGTTTCTC ACACCGAAGT 001360 001361 TCATGAAAAA GCCAACCCCA TAAGGAGCCA ATCTTAGGAG CCCTAAGCAA GTGCTGCCAG TTACAGAGAC AGCTGGGATG 001440 001441 AGGCTCCCAG GCTCCTGATA GCAGGTAGAG GAGAGAACGA GACCGCAAAG AGGGAAGCCG AGAGGAGTGA TGAAGACCCT 001520 001521 GGCCCTACCA TCTACTCAGG CTGTCTTTGC AGCCACACTG TGAGCCCAGG CTGGTTAACG CTTCCTCCTG GAGGAGAAAA 001600 001601 GCTAAGAGAG AAAACAAAAT CCATGCAGCG CGCTCCCCCT CGGCCCCTCC TCTCTGTCTC CTCTGTGCGC TAACCTCCAA 001680 001681 TGCCCTGCGG GAACCAATTA CAGTATTCTA ATGAGTGT |
Predicted Small Protein
Name | NONHSAT104799_smProtein_779:1009 |
Length | 77 |
Molecular weight | 8677.2375 |
Aromaticity | 0.0921052631579 |
Instability index | 62.3631578947 |
Isoelectric point | 10.3689575195 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.0333387686329 |
Amino acid sequence | MGICTQKPQKKKKMQFTTSQQSWWCRRMRRGQSLMAAGYFLMSSVRLGTAGRKGVLGECL DLHRCLAKGSQYIAYL |
Secondary structure | LLLLLLLLLLLLLEEEELLLHHHHHHHHHHLHHHHHHHHHHHHLEEELLLLLLLLHHHHH HHHHHHHLLLEEEEEL |
PRMN | - |
PiMo | - |