NONHSAT105945
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105945 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1036 nt |
Genomic location |
chr5+:180694825..180698702 |
Exon number |
2 |
Exons |
180694825..180695162,180698005..180698702 |
Genome context |
|
Sequence |
000001 acagactggc ccacctggct tctaacctta taggctgttt tggtattttt ctcttggtta ttctagcact gaggccaaaa 000080
000081 taactatgag agggatttag tttatagttA AACTTGGAGG CAAGGGAAAC GAACCCCCTC CACCCCATCC AGAGATTCGG 000160 000161 GCTGCATTCA CATGACAAGG TTAGTATTAT GGCAGGGGCT TGGACCTTGC TAAAGAATAG GAATAATTAA GCACTGATTG 000240 000241 CTGTCGCTTA GCAGGTTTTC TGTAAGTTAC CGACTGCCCC AGAGTCACAT AACTGAGGAC TGCAAGATTT ATAACTTCCG 000320 000321 ggccgggctc agtggctcCA TTTTTAATTT ACTTACCTTT TTTGCAAAAA CAAAACAACC AACCAAACTA AAAAAGACTT 000400 000401 TAGATCTTCC ACGGGCTTGC AAACCCACTG TTTTTCTGGC TTCTGAGACA GAAGGGGGCC TCCAGTGGTG CAGCCTTGAT 000480 000481 TCAGTGTGAT GTACCCACAG CTTTATCCCA GCAAGCTTGA CTGATGAGTG GGCATTTAGC AACACCTCCA ACAACAACCC 000560 000561 GTCCACTTGA TGGCCAGTTG GTGCTCTGGG CCTTGTTCTC TCCAGGCCTT CAGGAGCACC CAATCTCCAG GTCAGAAAGG 000640 000641 GTGCAGAGCT ATGTCTGTGG GGTAGGAAGT CCTGCTGGAG GCCAGCTTGT GAGTACAAAT TAACATACTA CCTAAAGCCT 000720 000721 TTACGTATTT AGCAATTGTT AAATCCTCCA GGCCTCAGCA GGCTCCCGTG TTGGATCAGA AACATAGAAT GCAgtattat 000800 000801 ataaacatga cactgaaaat attgttttgt aatgtgtaac tatgtatgtt gctgctcaga tgtctttatc attactgtta 000880 000881 cttttttttg tgtttttttg gatacagagt cttgctcagt cgccaggctg tagtgcagtg gcacgatctc agctcactgc 000960 000961 agccgccacc tcccaggttc aagcgattct cctgcctcag cctcccgagt agctgagact acaggtgcgt gccagc |
Predicted Small Protein
Name | NONHSAT105945_smProtein_845:1015 |
Length | 57 |
Molecular weight | 6731.9557 |
Aromaticity | 0.196428571429 |
Instability index | 77.7089285714 |
Isoelectric point | 9.43377685547 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.0611003160025 |
Amino acid sequence | MLLLRCLYHYCYFFLCFFGYRVLLSRQAVVQWHDLSSLQPPPPRFKRFSCLSLPSS |
Secondary structure | LHHHHHHHHHHHHHHHHHLLEEEHHHHHEEEEELLLLLLLLLLLLLEEEEELLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooooo |