NONHSAT107061
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107061 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2429 nt |
Genomic location |
chr6+:3306123..3309396 |
Exon number |
8 |
Exons |
3306123..3306999,3307107..3307208,3307297..3307398,3307500..3307586,3307756..3307957,3308158..3308336,3308420..3308523,3308621..3309396 |
Genome context |
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Sequence |
000001 TGGCAGTGCA AGAGGAGAGG TGCAAACTGG AGGAGTCCCA TTATCTTAGT CTGTCTGTGT TGCTATAAAG GAACACTGGA 000080
000081 GGCTCTGGAG GCTGGGTCAT TTATGAAGAA AAGAGGTTTA TTTGGCTCAC AGTTCTGCAG GCTATACAGG AAGCATGGCA 000160 000161 CCAACATCTG CTCTCCTTCT GGTGAGGCCT CAGGAAGCTT TTACTCATGG TGGAGGGCAA GGGGAGCTGG CATGTCACGG 000240 000241 GGTGAGAAAA GGGGCAATAG AAGGGGGAGG TGACAGGCTC TTTCAAACAA CCAGCCCTTG AATGGCCTAA TAGAGAGAGC 000320 000321 TCACTCATTA CCGTGGGGAG CGTACCAAGC CCAAGGGGTC CACCCCCGTG ACCCAAACAC CTCCCACCAG GCCCTACCTC 000400 000401 CAACACCGGG GGTCACATTT CAACATGTGA TTTGGAAGGG ACTCATGTGC AAACTCTATC ACCCAGGTAA GGGAAAAATA 000480 000481 ATTTGGTTCA TGCAGCAAAG GGCTTGCTTG AAACCACAGA TGTGGAACAG GAAGTTTCTA AAGCTGTAAG TATTTAATTC 000560 000561 TTTACTATGT GGTGGTACTA TCATTATCCC CATTTTACAG ATGGGAAAAC TCAGGCAAAG AACGTTCAAA TACATTGCCC 000640 000641 AGGATTACAC AGCTATTCAA TGGCAGAGCT GGGATTTAAA CCCAGACAGG CTGACTGGAG AGACTGTCAG GCTGGGAAGA 000720 000721 CCTAAAGGAG CCCAGCCTTC ACACCTAACA AGTGATTGCT CTAAGCTGGC TGGCTCACTG ATCCCCAGGG CTTCTGTGGG 000800 000801 AAGGACGTGG GCAGAACTAC AAGTCTCCAC TCACCCTCCA AGACCTAAAC CCCAGGTGGG GGGAGAGAAG CAGAGGACCA 000880 000881 GGACCAGGAA GGAGCAGGCA GAGGTGCTGC CAGGCTGTGT GTGTCTGCAG TGCCCCAGGG GTAGAGGGAG GCAGATAGCT 000960 000961 GCCTTCCCAC CAAGCAGGCG GATTTTAGAG CAGATGTTTG CTGATGGGCC ATGAACATGC TGAGCAGACG GCATACGGCA 001040 001041 GCGCTACGAC ATGCACAGGT GGCACTTGGT TACTGACAAG CCCAGCAGAA CTTGGGGACT GTGGAGAGGG CTCTTTCCTC 001120 001121 CTGATGACAC ATCTAGTGGA GGTCTCGTCT GAAGGTGAAT GACAGATTTC CTCACGGAGC CCTGCGGATG TTCCACTGCA 001200 001201 GGATAGTCAT ATGCTGGACG GCAGACTGAG GCCCAGGCCC TGCTGGCGTC CAATATGGAC GTATCTCGGA TCAGCGAGAG 001280 001281 CTGCTCAGGA ACCACACCAC GGTAGGTGCA TGCTGAGCAC CTGCTGGGAC AGCCCCCGGT GTGACACTGT CCACAGCAGC 001360 001361 TGGAAGCGGT CTACAGCATG GGAGAACCTA GAGGACACCG TACTCTGTGC AATAAGCCAG CTGCCGAGGG AGGAACACCT 001440 001441 TGACATTCCA CTCACATCAG GCACTAGAGG AGTCAAATTC ATAGCAAGTA GAGTGGGGGC TGCCAGGACC TGGGATAGAG 001520 001521 GAAGGTGAAA AAATTCTAGA AATGGATGGT ACGTGTATTT TACCACAATT AAAAGAAAAT ATTACAGAGA AGACGAAAGC 001600 001601 CCCCCCATAC CGCTCACCCC AATCCCAGTG CCCCTGCACT CACCCTCCCG TCCACACACT GCCCCCACAT CACAGTGAAA 001680 001681 AATGCCAGTC TCACTCTAAA CATTCCCTTC CTTTTAGATT GGCACACATT TGCCCACCTG GTGCTCAGAG ACAGTTCCCC 001760 001761 CAGGTGTGGA CAGTGGCTCT TCTCCTGAGG TCTTGAATAA AAGCACATTA ATTCCTACTT GTGAGGGGAG GGCACTAACT 001840 001841 CAGGGTTGAT CAAACCTCAC AAAAACGTGA ACCATGCCAT TTTCCAGCAT GTACTTGGGA CATAAAACCT AACATAAAAC 001920 001921 CACAGCATGG GCCGGGTGTG GTGGCTCACA CCTGTAATCC CAGTACTTTG GGAGGTCGAG GTGGGTGGAT CATGAGGTAA 002000 002001 GGAGTTCAAG ACCAGCCTGA CCAACATGGT GAAACCCCGT CTCTACTAAA AATACAGAAA TTAGCCAAGC ATGGTGGCGC 002080 002081 AGGCCTGTAA TCCCAGCTAC TCAGGAGTCT AAGGCAGGAG AATCACTTGA ACCTGGGAGG CAGAGGTTGC AGTGAGCCGA 002160 002161 GATTGTGCCA CTGCACTCCA GCCTGGGCGA CAGAGCGAGA CTCTGTCTCA AAAAACAAAC AAACAAACCA ACCAAAAAAC 002240 002241 CCCAACAACC CACAGTGTGG ATCGGCAGGT CCCTAACCCC ATGGCTTCAA TTAATCTTAA AAAGAGCCGA GGGCTGGGCG 002320 002321 CTTTGGGAGG CTGAGGTGGG TGGATCATTT GAGGTCAGGA GTTTGAGACC AGCCTGTCCA ACATGGTGAA ACCCCCATCT 002400 002401 CTACTAAAAA CGCAAAAATT AGCCAAGCA |
Predicted Small Protein
Name | NONHSAT107061_smProtein_1541:1795 |
Length | 85 |
Molecular weight | 9466.8752 |
Aromaticity | 0.047619047619 |
Instability index | 87.2476190476 |
Isoelectric point | 9.22662353516 |
Runs | 11 |
Runs residual | 0.0030330603579 |
Runs probability | 0.0307205601324 |
Amino acid sequence | MDGTCILPQLKENITEKTKAPPYRSPQSQCPCTHPPVHTLPPHHSEKCQSHSKHSLPFRL AHICPPGAQRQFPQVWTVALLLRS |
Secondary structure | LLLEELLLHHHHLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEE EEELLLLLLLLLLLEEEEEEEELL |
PRMN | - |
PiMo | - |