NONHSAT112688
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112688 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1015 nt |
Genomic location |
chr6+:40454054..40455602 |
Exon number |
3 |
Exons |
40454054..40454289,40454440..40454614,40454999..40455602 |
Genome context |
|
Sequence |
000001 GTAATCTTAG AAGGAACTCA AGACCCCTGG GCTAATGAGT TTCCATTCCT GACTGTGCAA TAAGAGCTGG ATGCATCTGT 000080
000081 AACAAAAGGC GGGACCCCTG AGCCCTGGAG TACAGAGATT CCTTGGGGAA TTCGGCAGTT AGTGGGGCTT TATGGCAGAT 000160 000161 TCTTTCAGGG TTATGATGGG CTTGGGGGGA TGGCAGGAGG GCATCTCAGC GGACCTGTGC CTGGGTAAGG AATGGGGCAC 000240 000241 TAAGTTTTTT GAGGGAATGA AATGTCAAGC CAATGGGGAT ACGCTACAGA ATCCCACAAG GGTGTGTACG AGTGGGCAGA 000320 000321 GAAGTGACAG ATGAGATTTG GTGTGGGCAA GTGTAAGATA ATGTATTTAA AGACATATCT CAAGTGCTGT ATGACTTCCT 000400 000401 TCTGAGATGA TTTGGGGAGG TCATCCAGTT CTATGGTGAG TAGATCATTT ATGCCAATGA GCCCCAAGTT CATGCCCTCA 000480 000481 GCCCTGGCTT CACCTGAGCT CCAGACTCAC CATTTGACTC TCACTGACAT CACCACTGGG GTGCCTCACA GGTGCTCCAG 000560 000561 ATCTGGCAGG GCGTCAATGA GTTCTTGCTT CTTCCCTTAC ACCTGTTCCT CCCGCAGCCT TCCTCATCTC ACTAAATGGC 000640 000641 AACTCCATGG AGCCTATCCT TGCATCTCTG CAAAATGCAC ACATCCCGAA AAAGTCGGCA GATGGGAAAG GGAGGTAGGC 000720 000721 AGATAGCTGT GAAAGGTGCA TGGCCTCTGG CTTTTGGAAG GATGACCAGA AGGGATGGCT GGAAGCCCAA AGAACTGTGA 000800 000801 AACTGATGGG GGAAAGTCAA TGGGTTTCAT CAGTGAATCC AAGGATGGGA TGGCTAGGAT TTGGAAGTGT AAAAAGATAC 000880 000881 ATGTCAGGAT GAAACCAAAG GAAGCTACCA GGCCCACTGT GTATTTCCAC ATGGAGTGCC GCTGCCCACC CTTCCCAGCT 000960 000961 GTCTGCTGGA GGTATCCTGT GCCTTTCATC CAAATCCTAC TTTTTCTCTG CATCC |
Predicted Small Protein
Name | NONHSAT112688_smProtein_635:799 |
Length | 55 |
Molecular weight | 6180.2946 |
Aromaticity | 0.0740740740741 |
Instability index | 47.5074074074 |
Isoelectric point | 11.7344360352 |
Runs | 11 |
Runs residual | 0.0410117434508 |
Runs probability | 0.0186844598609 |
Amino acid sequence | MATPWSLSLHLCKMHTSRKSRQMGKGGRQIAVKGAWPLAFGRMTRRDGWKPKEL |
Secondary structure | LLLLHHHLHHHHLLLLLLLLHHHLLLLEEEEEELLLHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |