NONHSAT112966
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112966 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1705 nt |
Genomic location |
chr6+:44519314..44521018 |
Exon number |
1 |
Exons |
44519314..44521018 |
Genome context |
|
Sequence |
000001 AACATTCCAT TTTATAGTCC CATGGACCGA GAAGCTGAGA AGGCTGTCGT CTCATCTATA GAGAGCATTA CTAGATCCAA 000080
000081 GTTGGGGAAT CATGGCAGGG ACTGGAGCCC TGCGTTCTAC CTTTGCTGTT ACTTAGCTGT GTGACCCTTA GCAAGTCACT 000160 000161 GGCCAGGTCT GGATCACAGT TTTCTCATCT GTACATGAAA AGGTCAGGCT GAAATATTTC AAAGGCCCCC ATTCAGATCC 000240 000241 AAGTTTCTGG AACTTTTTAT GGTGAAGTAT TTAACCCACC TCACCGCCTA ACTCTGCTTT TTTGCCTGTA ACCTCCATTC 000320 000321 TGAGCCAGAG CCTGCAGGGG TTTCCAGCTC TGCCTAGGTT CCACGATGGG TTCTAATTCC ACCCCCTTGG AACCTGTGCC 000400 000401 AGGGCTAATT CTCCCAGTCA GGAATTCCTT CTGTGGAACT AACCCATGTC TCTATTGCTG CAGTTTCCAT TAATTTCCTT 000480 000481 TGACCCGTCC TCGGGGGGAA GCTCATGATT ACTGATAATT CTAGTTAATC CTTTAACTAG GAAAAGGAAA CTAACCATCT 000560 000561 AATAGGCCGA ATGAGGGAAT GACTTGGCAC ACCATCTGCA AAATATAAAC CTAAAATATT CCGGAGTGTT CTCTGGGAGG 000640 000641 CCACAGCCAT TAACGCCCCG AGAGCCGGCT ACTGCAGATA TTTGCTCCTC ATGGTGGGCA CACTTCTGAA CTGAGCCAGG 000720 000721 AATGGGCACA GGCAGGGCAG CCCATGCCGT TTCCCCCTCT CTGCATGTTT GTGGCATAAC CATCACAACC GTTTTACTTG 000800 000801 CTAAGGCAGA ACATCTCCAG CCCCGTAAAA AGCTTTCTGA CATCTCTCTG AGCTGCTGGC TTCCCCATTT TCAGAAGATG 000880 000881 CCATGGTTTA TTAATTCTCT GCAGAAGCAA TAAGAACTGG GTATTGGCTT AATTTGGGGC CAATTTATTG TTATGATAGA 000960 000961 AAAATTGGGC TCTGTCTCCT CTTATTCAAC ACAAGGGCCT ATAGTTCCCC CTTTAACCCC TCCTGTGCTG GGCTCTTCCT 001040 001041 CCAATCCACT TCTACTTTTT TGTCTTTGGG ATATTATTTA ACCTCTCTGT GCCTCTGTTT CCTCAACTGG GATAATCATA 001120 001121 GTACCTATTT CATAGAATTG TTTTGAGTAA ATACTGAGTT ACTGAGTTAT TTTAGGGTCT CTCTCTCTCT CTACCAGAAA 001200 001201 CTTCAAATTG ACACACTGTT TTAAAAAATC TGGGAATTTC ACTTTCTAAA AATCCAGGTT TTCAGCTTCT CGTGAGTGAC 001280 001281 TGGGAACCAC ACTTACCCTA TGTCCACACA ACCACCTGGA GCCGAGTAGA GGTGGCTCCT GCTAAAAATG ACATCTCATG 001360 001361 TCTGTCCAGG TCCTGGTCCT CCATTCCACT CAGGGGCAGG GCCTTTCTTC ATGTCCTGGT TGACCCAGAG GCCCCGAGTC 001440 001441 TGTGGTCTGG GTTCCCCTGT TTCCTTAGGC TGAGCCAGTT GTAGCCACAG AACTCAATTC TCCTCCACAC CCGAAGCTGC 001520 001521 TCGGAAATGT CCTTCCAGCA TTACCTGCAC CAATGGTAAT AGGCAGCTAT GCTCACTGGG AAAGAAAATC TGAACAAGGC 001600 001601 AAATGGAACC TCTCCTGAGG CAAATCTACC CCAGTGGGTT GAAGATGGAA TTGTAATTTG GAGACAGAAG AAAAGAAAAA 001680 001681 AATAATAAAC AGCAGCACGA TTCCC |
Predicted Small Protein
Name | NONHSAT112966_smProtein_1568:1684 |
Length | 39 |
Molecular weight | 4379.0097 |
Aromaticity | 0.0526315789474 |
Instability index | 43.5973684211 |
Isoelectric point | 9.99468994141 |
Runs | 5 |
Runs residual | 0.0410318559557 |
Runs probability | 0.0363186716129 |
Amino acid sequence | MLTGKENLNKANGTSPEANLPQWVEDGIVIWRQKKRKK |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHHLLEEEEEEEELLL |
PRMN | - |
PiMo | - |