NONHSAT115085
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115085 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1596 nt |
Genomic location |
chr6+:135818939..136011976 |
Exon number |
4 |
Exons |
135818939..135819138,135963331..135963414,135993432..135993567,136010761..136011976 |
Genome context |
|
Sequence |
000001 GCCTCCACCG CCTTCTTCCA GGAGGAGGGG CCGTGCGGCG CCTGCCCGGG GGCCCTCAGG CCGCAGGCGG GCGCGAGCTT 000080
000081 CAGGGAACTT AGGGGGCTCC CGCCTCCCCG GCCACGCGAG CGGGAACAGT CTCCTCCACT CGGAGCGATT ATAGATCCAG 000160 000161 ACTCCTGTGC CTGACCACTG CCCATGGCCA ACTCTCTGCT GATGACTGGA CTTGACTACA CAAGTTGTTG GCCATCTTAA 000240 000241 AACCACTCAA AGTTGACGGT CTCCTCTCCT GCCTCCTGCG GCTTCCATTA CCATGGCAGA GACTGTGGTG TCTGAGGTGG 000320 000321 TGTAGCGTAC TGAAGCAAGG CTGTCTTGAA GAAGAGGAGA CAACTCACAA TTCTACCACC TTTGTTGACC TCTTCTTCTC 000400 000401 CCCCAGCTTA TTGCTGTAGA GGCTACCTGA GCTCATTGTC CCTGGAGATG GACCAAATAG AAGAATAAGC AGTGCCTGTG 000480 000481 TGGTGAGCTT CAAGAGGCAT CTGTTCTCTG GGGAGTGGGT GGGTGGTAAA GCAAAGACGG GAGATGTGTA TATTAGCTAT 000560 000561 CCATTACTGT ATAATTAATT ATACACAAAA CTAAACTATA CACTAAACTA AAACTTCACA GCTTAAAACA GGAAATATGT 000640 000641 ATTATCTCAC ACAATTTCTG AGAGTCAGGA ATCTGAAAAT GGCTTAGCTA GTTTGGTTCT GGCTCAGGGT GACCTATGGA 000720 000721 GTTGCAGCCA AGATGTCATC TGGGACTACT ATCATTGGAA GGCTCAGCTG GGGCTGGAGG CTACACTTCC AAGATGGCTC 000800 000801 ACTTATAGGG CTATTGGTGG GAGGCTTCAG TTCCTCTCCA CATGAAACTT TCCTCATGCC ATGGAACTGG CTTCCCTCAG 000880 000881 AGTGAAAGAC CCAAGAGAGA GACTAAGACA GAAGCTGCAA TGTTTTTATG ACCTAGTCTT GGAAGTGACT TACTGTCATT 000960 000961 TCTACTGTAT TTTATTCATT AGAAGCAAGT CATTAAGTCC AGCCCACATT CAAAGTAAGA GGATTTAAGC TGAACCTCTT 001040 001041 GAAAAAATGG TATCAAAGTA TTTACGGACA TTTTAAAAAC TACCACAATA CATATAGGTG AACTTCACAA GGTGTAGACA 001120 001121 TGGGCTGAGA CGGAATATTG GATAATATCT CATTCTGCAA ACAGCAGCCT CATCTGTAAT AAAATCCCAG CATTCAGAAA 001200 001201 TTATCACGAT CAAGTAGGAA AAGGGCTTGT TGGAAAAAAC TTATCAAAGA TGTTACTTCA TTTATCCATT TATTCTGAGC 001280 001281 CATAGCATAA TAGCGACAAA TTGTGTGTCC TGTGTAATTT GGATACCTCT GCTCAATAAT AGCTGAACAG ATTTTATCCT 001360 001361 ATTTTTAGAA TAGTTAATAT ATACACATGG CACAAAATTT AAAAGGTATA AAAGTTTCTG GTTCAAAAAT AAGATTCCCT 001440 001441 CATTTTCTTT TTTTCTGATT CTTTGAATGC AGTTCGATTT ACTGATTTCT CATGTAGCCT TAGAAAGTAT TCTATGTACT 001520 001521 TACAAACATA TATGTACACA TATTTTTTCT TTCCCACAAA TAAAATACTG TATGCATTGT TAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT115085_smProtein_860:1027 |
Length | 56 |
Molecular weight | 6643.8282 |
Aromaticity | 0.109090909091 |
Instability index | 83.444 |
Isoelectric point | 9.50555419922 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0316296688846 |
Amino acid sequence | MELASLRVKDPRERLRQKLQCFYDLVLEVTYCHFYCILFIRSKSLSPAHIQSKRI |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHHHHLLEEELEEEEEEEEEELLLLHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooo |