NONHSAT115288
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2630 nt |
Genomic location |
chr6-:141128740..141219567 |
Exon number |
9 |
Exons |
141128740..141128958,141137269..141138214,141167095..141167471,141173956..141174059,141184950..141184976,141184986..141185033,141185039..141185580,141216940..141217067,141219325..141219567 |
Genome context |
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Sequence |
000001 CTCTTCCTGT GTGGAAGCTG GGATTCCAAT GGCAGGCAGG AAATCTTGTA GTAGGTGATC GTGGCCTTCC TTGGGATCCC 000080
000081 TGTTTCCCCC TTTTATTCCC TTTTCACCCA GTAAAACCCT GCTTTGCTCA CTCTTTAAAG CATCTGTGAG CGTAAATTTT 000160 000161 TGTGGCCATG GGATGGACAA GAACCACATG TTTACCTGAA GTCCTGTGAC ATTTTGGTGT GCAGCATGGG AGCTCCAAAA 000240 000241 GTGAGTCAAG TGAACTTATT TTGAATGGTT TATGGCCTTT AATAATTACA TAAGTTATAT ACTCCTGTGA TCAAAATTTG 000320 000321 GAGCATGTTT GTTTCTCTCT GCCTGGTTCC TCCAGAATTT AGAACCTATC TAATATATTA ACATAAATTC AAATATATTA 000400 000401 GTAGTTACAG GAAATGCAAA TGAACTTAAT TCAGTAAAGT TTTAGATAGA ATTACAAAAA TCTATCCATA TGCTTTTTGC 000480 000481 TTGAAAAACA TGGATATAAA ATTTTAAGCT AAAGAAATGG ATTTTAATCA ATAAATGAAA ATAACATTAA ATTTTAAAAG 000560 000561 ATCAGATAAA GTAGATTACA AGGTAAAACT ATTACTAAAG TCATTGCATA CATAAAAATA TAATTATTTG GGAAAGAACA 000640 000641 GCAATTCTAA ATTGGTCACC ACAAAAATAA CAGAGAGTTT TATATATATA AAGCAAAAAT TATTTGAAGC TTCAAATTCA 000720 000721 CCAATATTGT GGGAATTTCC CAATGGCAGG TTGATCGTTA CTTTTGTGGA TACAGATCCC TTAAATAACA TTAGTAATGA 000800 000801 GCTTGACTAG AGCATACATG GGATCCCAGA TCTAATTTAG AAAGCCATAC TCTTCTCAGC ACACATGGAA TTTTAAAGAA 000880 000881 AATACACCGG TTGCACGTAA GACATGTTTT TCAAAGAATA GTTGTCATAA AGAAAGCTTT GTTGACCGGG TGCAGTGGTA 000960 000961 ATCCCAGCAC TTTGGGAGGC CCACATTCTT TCAGATGCCA GAGGATGCTA TAGAAAAATG CGTGCCCTCT TGTAATACTT 001040 001041 TGTTCAAGTT CTGATCAGAA GGATGAATGA TGGAGCCCAA GAAGCCAGTG TTTGTTTGTT TGTTTGTTTT TGAGACAGAG 001120 001121 TCTCATTGTG TTGCTCAGGC TGGAATCCAG TGGCATGATC TCGGCTCAGT GCAACCTCCG CCTCCTGGGT TCAAGCAGTT 001200 001201 CTCCTAGATC AGCATCAGCG TCCCGAGTAG CTGGGATTAC AGGCACCCGC CACCATGCCT GGCTAATGTT GGTCAGGCTG 001280 001281 GCTCGAACTC CTGACCTCAA GAGATCCACC TGCTTTGGCC TCCCAAAGTG CTCGGATTAC AGGCATGAGC TGCCACACCC 001360 001361 AGCCTCCAAA TACTTTTTTT TTAAATCAAA ATAATGATTT CAATGACTGA GATCTGTTAT GTATTTCAAC ATAATCATGT 001440 001441 TTCATAAAGA TTTAGTCTTC TGAAATTCAG ACTGTCCAAT GTTAAAATTA GTCTTAAAAA GCACGTTATT GCTATCATAA 001520 001521 ACCATTAAAG GTGGTTTATA ACCAGGGGAA AAATCCTTTA AAATCCTTCA CTACTACAAT TCACAAGCCA TTGCTACAAT 001600 001601 TCACAACTCG TTTGTTAGAG TCTTAACCGC CCTCAGCTTT GCCTTGGGCC ATTAACTAAC AAACCAATCA TTAACTGCTA 001680 001681 GTAATGACCA CTTTCCCAGG GATTATTGCT TAATTCAACT CTTGTGTGGG ATCCATTATT TTCTGAGATG TCAAAATAAC 001760 001761 TATGCATTAA GACATTTTTC TGTAATAAAA GCACCTCCTG AAATAAACAA TGTGAATGTC AGAGAATTAA ATTGTTCAGT 001840 001841 GTACACACTA TTTAAAATAC ATTACTTTAA TGAACAATTC TGATGTTTCG AGGGAACATT CTCATTTTTT CGCTCTCCTG 001920 001921 AGCATATCTA TCATGTAACT TAGATGCAGA ATTAATATGT ATTTTTCTTC AGTAAAACAC ACAATGTCAA GACATTTATA 002000 002001 TTAGTAAACT GTGTTCTATA TTCATCTGAG TAAGGCACAT TTGATTATTA GCATTCTGCT CCTGAGAAAC AAGGCAGGTT 002080 002081 TGCTTGTCTG TTGCCATGGA AATAAATTAG GAAGGATAAC CTGCCTACTT ATCAATTTTT ATTAATGCAA TCAGCCTACC 002160 002161 TGCTTAACCC ATAAGTAACA ATAGCACATT TAAACTAAGC CAATAAAGCC CTGTAACTCT AGGGGTGCCA GTTAAAGTAA 002240 002241 ATAGGATAGA AAATTGCTGA AATAAAAAGT CTGAGTTATG TGTCATAGTT ATGGGCCCCA TTAATATTAC AGGATAAAGA 002320 002321 ATGTTGCCAT TGAGAGGGCT CTAATGGTGG AATTACCTTC AACTAACATT TACTGAGAGG AGGAGAGGCA ACTGAGACAA 002400 002401 GAAGTCAAGA GATTTAAAGT CAGCAGTTCT CAAGGAAAAT GCTACCCTGG AAAGAAAATA TAACCTTAAA GTCTGGCAAC 002480 002481 TGCTCTGGAC TTTTTCCTGA GATTTTCTTT CAAGGTAAGC CCAGTCTGTC TTAATGCACA GTAACCTATG CCTGGTGATT 002560 002561 TAAAGCTCTA AAATTGACCT TTTAGCTTCC CATTTCCAAA TTGTAATGTA ATCTATTTGA TACAAAAAAA |
Predicted Small Protein
Name | NONHSAT115288_smProtein_1154:1393 |
Length | 80 |
Molecular weight | 8835.1777 |
Aromaticity | 0.0886075949367 |
Instability index | 45.0582278481 |
Isoelectric point | 10.6513061523 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0383886560358 |
Amino acid sequence | MISAQCNLRLLGSSSSPRSASASRVAGITGTRHHAWLMLVRLARTPDLKRSTCFGLPKCS DYRHELPHPASKYFFFKSK |
Secondary structure | LLLHHHLHHHLLLLLLLLLLLHHHHHLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLEEEELL |
PRMN | - |
PiMo | - |