NONHSAT116533
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT116533 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1905 nt |
Genomic location |
chr6_cox_hap2-:1210563..1233001 |
Exon number |
6 |
Exons |
1210563..1211101,1212326..1212456,1221922..1222392,1222507..1222842,1231111..1231388,1232852..1233001 |
Genome context |
|
Sequence |
000001 AGGAAATTTC TGGTGGGCCT TCGCGGCTCC GCTGGGTTGG CAGCCGCTTG AGCCACTGCG AGGAAAGCAA AGTCTGGGCC 000080
000081 ATGGAGATGA GCCTAGTCCT GCTGTTCCTG ATCCGCACTG CCCTTTTTGC ACCCCAGGGA GCTGCTGCTG acggcgcctc 000160 000161 cctctgtcgc caaagttgga gtgcagtggc gcggtctcgg ctcactgcaa gctccgcctc ccggattcaa gtgattcccc 000240 000241 tgccttagcc tcctaagtag ctgggattac aagtgcccac caccacacct agctaatatt ttgtatttta atagagactg 000320 000321 ggtttcacca tgttgaccgg gatggtctca atctcctgac ctcgtgatct gcctgcctaa gcctcccaaa gtgctgggat 000400 000401 tacaggcgtg agccaccaca cctagctgGA AGAGGAGATA AATatatgaa ggtgctgttt ggcacagaat ttaataggga 000480 000481 agaaagagac agtataactc accagtgctg ggtctcatca tcctgcaatt tcagaacaac tatgaataca aaaagaattt 000560 000561 taaaatccca gtcctgccta gaaaggggaa gtcatctcta aatatggtgg ccctggggca GCTGGCCTCC CTGCCAGGCC 000640 000641 TCTTCCATGG GGGCCCTTTC TGCAGTGACT GTGGTTTCTT CCCATTTTAC TCTGTCCTGT GTCCTGACTG AAGCGACAAG 000720 000721 GTGTGTCTGC AGCTGTGCTC ACACCTGGAG GAAACCTCAA TGGTCACATC CTCTTTCCTG TGTCAAGAAG CATCGTCCGG 000800 000801 GGAGGTGAGA AGAAGACAGT CCTCCCTAGA ATTGAAGAAC CAGGGAGAAC CAGATGGGCT GGGCAGGTGG GTTTTCACCT 000880 000881 GGAACCTGGA GGATGAGCAA TGACATCTCT CCACCCTGAG CTCAGCCCCG GCATCCACCT CCTGGGCTCA TGAGCAGTGC 000960 000961 AGTGGTGCCT CCTAGTGGTC TCTGCTCTTC CTTTTCCAGA TCAAGCACAA ACCTGAGATC CAACTGTCCC TCTTATGCGC 001040 001041 CTGGGTTTCT TCACTGGACA CCAGTATGAG TCAACTTTCC TGTAAAGCAG AACAAGCACG AGATTGGACC ATGTTAGAGG 001120 001121 AGGAATGGTG TCATCTCCAC TTCTGGAGAG ATCCCTGTCC CCGTGTTTGG GGGAAGGACC AAGCCTCACT CCCATGCAGA 001200 001201 GAAGAGGCTC TGACTGTAAC TGCACCTGTG GAGAGAGGAT TGCGGCCTGT TGGCAGAAGA GTAGTGTCTT GGGCCCCAGC 001280 001281 TGACCTGATG AATATCAATA TCCAATGCCC TGTAATGAAG TCATGTGTGC ACATATCATC ACTTCTGCAT GCAGTCTCAT 001360 001361 GGGAAGATGG TGCCAAGAAC GAAGAAGGAA GCTCCTGCCC CTCCTAAAGC CGAAGCCAAA GCGAAGGCTT TGCAAGGCCA 001440 001441 AGAAGGCAGT GTTGAAAGAT GTCCACAGCC ACAAAAAAAA CAAGATCCAC ATGTCACCCA CCTTCCGGCG GCCCAAGACA 001520 001521 CTGTGACTCC GGAGGCAGCC CAAATATCCT TGGAAGAGCA CCCCCAGGAG AAATAAGCTT GACCACCATG TTATCATCAA 001600 001601 GTTTCCGCTG ACCACTGAGT AGGCTGTGAA GAAGATAGAA AACAACAGCC TACTTGTGTT CACTGTGGAT GTTAAAGCCA 001680 001681 ACAAGCACCA GATCAAACAG GCTGTGAAGA AGTTTGTGAC ATTGATGTGG CCAAAGTCAA CACTCTGATT CAGTCTGATG 001760 001761 GAGAGAGGAA GGCATATGTT CGACTGGCTC CTGACTACGA TGCTTTGGTT GTTGCCACCA AAATTGGGAT CACCTAAACT 001840 001841 GAGTCAAGCT GGCTAATTCC AAATATATGT ATATCTTTTC ACCATTAAAA GAATCTTAAT CTCTC |
Predicted Small Protein
Name | NONHSAT116533_smProtein_1304:1525 |
Length | 74 |
Molecular weight | 8575.4593 |
Aromaticity | 0.027397260274 |
Instability index | 91.4945205479 |
Isoelectric point | 10.8561401367 |
Runs | 9 |
Runs residual | 0.0208572691118 |
Runs probability | 0.0357023690357 |
Amino acid sequence | MPCNEVMCAHIITSACSLMGRWCQERRRKLLPLLKPKPKRRLCKAKKAVLKDVHSHKKNK IHMSPTFRRPKTL |
Secondary structure | LLLLHHHHHHHHHHHHHHHLHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL EELLLLLLLLLLL |
PRMN | - |
PiMo | - |