NONHSAT118950
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118950 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2049 nt |
Genomic location |
chr7+:5878697..5888012 |
Exon number |
4 |
Exons |
5878697..5878835,5879580..5879706,5880321..5880487,5886397..5888012 |
Genome context |
|
Sequence |
000001 GTAGTTTCTA CGAGActttt ctgtgcctcc tttgcccatg ccaggcctct tgctaggaat atccttcaga catcagatca 000080
000081 ttctgtttat ctttcgtgat tctactcccc tgtgatctcc taggaagctt cacttgacaG GGTCACTGTC ATTCGGGGAC 000160 000161 GTGGCTGTGG GCTTCACCCG GAAAGAGTGG CAGCAGCTGG ACCTGGAGCA GAGGACCCTG TACCAGGATG TGATGCTGGA 000240 000241 GAACTACAGC CACCTGCTCT CTGTGGGCTG AACTGTCTGC TTGCTTGGAA GGCCCAGCTG GCTCAGCACA AATCCTTTAA 000320 000321 CCGTTTCTCC CCAAGAGGGT GTCAAGTCAG CAAACCAGCT GTGATCTCCA GTTTGGAGCA GGGGAAGGAG CCATGGATGG 000400 000401 AGGAGGAAGA GATAAGGACG TGGAGCTTCC CAGAAGAAGT TTGGCAAGTT GCTACCCAGC CAGATAGCCA ACAGCAACAC 000480 000481 GAAGACCAAC ATTTGAGCCA TACGTTTCTA GACAAGAAAG ACTGGACCGG AAATGAGCTT CATGAATGTA ACGAACTTGG 000560 000561 AAAAAAACTC CATCAGAACC CAAACCTCCT TCCATCAAAA CAGCAGGTCC GCACACGTGA CTTGTGCAGA AAGAGTTTGA 000640 000641 TGTGTAACCT GGACTTCACT CCTAACGCCT ACCTGGCGAG GAGGAGATTT CAGTGCGACG GCCACGGAAA CTTCTTCTCT 000720 000721 GTTCGAAACT TGAAACTCCA CCTTCAGGAG CGAATCCACG CGGAGGTCAC CAGTGTGGAA GTGCTTTAAG CTGTGACGAG 000800 000801 GGAGTTCCTG CAGCTCAGGG AGCCAGTAGT GAGAAACCCC ACGAATGCAC GAAGTGTGGG AAAGCCTTGT GCTGCAGATC 000880 000881 GGACCTCAGG GTACATCACG GGGTCCACGC GGGGGAGAAG TCCTCTGCGT GCAGTGAACG GGGGAGTGGT TTCAGGGAGA 000960 000961 AGCTTTGCCC TGACAAACAG GGAACTCACA CAAAGGAGAA ACCCGCTAGA GACAGCAGAA GTGGTAAAAC GATCTTCCGG 001040 001041 AAGACACGCC TGTGTGTCCC GGGCACAGTT CACGCCGGAG CGAAGCCTTA CAAGTGTTGG GAGTGTGAGA AAACCTCCCA 001120 001121 CAAGTCGCGC CTCATCGAGC ACCTTCGCTC CCACACGGGG GAGAAGCCCT GCGGCTGCAG GGAATGCGGA AAGGCCTTTT 001200 001201 TCCAGAAGTC ACACCTCATC CTGCGTCAGA GGACTCACAC GGGGGAGAAG CCCTGCGACT GCGCGGAGTG CGGGAAAGCT 001280 001281 GCTCCCAGGA CTCCTGCCTC CTGACCCACA GGCGGACTCG CGGGGAAGAA ACCGTACGAG TGCTCCGACT GCGGGAAGAC 001360 001361 CTCCCGGAAG GCGAACCTCA TCCGCCACCA CGGGATCCAC ACGAGGGAGA AGCTGCATGG GTGAAGAGAC CGTGGGATCG 001440 001441 TCACAAAGTC ACATCACGAG GTCGCCGAAC CTCTAGGAGG GACATCGCCA GGGAAACAGC CCTCAACCAA AACTACGACG 001520 001521 CCACCCTAGG CAGAGGTCCC ATATCGGGGT GAAATTCGGC CACTTTGGTG GCTTAAGGAA GGCATGGTCA gctgggcgct 001600 001601 gtggctcacg cctgtaatcc cagcgctttg ggacgccgag gcgagtggat cacctgaggt caggagttca agaccagtct 001680 001681 ggccaacatg gtgaaagctc ggctctacta aaagtacaaa aaattagccg ggaattgtgg caggcgcctg taattccagc 001760 001761 tactcgggag gctgaggcag gagaatcggt tgaacctggg aggcggagat tgcagtgagt cgaggtcgca ccactgcact 001840 001841 ccagcttggg tgacagagtg agactcagtc tcaaaaacaa acaacaaaaa aGCATGGTCT GTTAAAACTA ACGACGGAAG 001920 001921 GGTAATGGTA TGCTAGAGTG ATCTATTTTC GTAGGTGTAC tttttttttt tgagacggag tcctcgttct atcgcccagt 002000 002001 ctggagggca gtggtgccat ctcggctcac tgcagcctct gcctcccgg |
Predicted Small Protein
Name | NONHSAT118950_smProtein_1583:1693 |
Length | 37 |
Molecular weight | 4079.6352 |
Aromaticity | 0.138888888889 |
Instability index | 78.4944444444 |
Isoelectric point | 4.67706298828 |
Runs | 6 |
Runs residual | 0.0137917637918 |
Runs probability | 0.0257904963788 |
Amino acid sequence | MVSWALWLTPVIPALWDAEASGSPEVRSSRPVWPTW |
Secondary structure | LLEEHHHHLLLLHHHHHLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |