NONHSAT119212
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT119212 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3382 nt |
Genomic location |
chr7+:11292257..11295704 |
Exon number |
2 |
Exons |
11292257..11293759,11293826..11295704 |
Genome context |
|
Sequence |
000001 AGTATTATTC AATGAGATTT TTATAGAACT GTCACTCTGC AAAACTAGGC ACTGAATGAA TTGTAGGATT AATGAAGCAT 000080
000081 AATCTAGTTG GGGCTATTAG ATTTACATGT TTGAAACATT GAAGTAGCAT GGCAGtgtca agaactgtga agggttttat 000160 000161 attttacctt atttgtaaac ttacaagtag gcttgtcaca gtttctcata ccctggcaga agacacaaga cagctcagat 000240 000241 tttcttactt acagaacagc acgctaaatg agtgttagca tatttaagtc acttcccctt tcctctgagt tccccagaag 000320 000321 tgatgcagga ggccagataa atgccagctc actttctgga ttttgctaca gaagagaaca ccatgtgtag ggaacctgaa 000400 000401 ttttttgtaa taggccgtaa gcatgcctgc cctttggcct ggaaagagac actatatctt ccagggctgt ttgctgtgta 000480 000481 aacatccttg aaaagacagc cttgaacaaa gggcagtcaa tagttctact caaaagacat ggagaaatgc aaaagaccca 000560 000561 tggagatttg tcttctaaTC GGCAGCATCT TGCAAGGTAA GTTGCATAGG CAGTACTAGC TAGAGAAATT CAGTTAAAGG 000640 000641 AACTATAAAC TTGATCTTCA ATTCCAAACA CCCTAATTTA GTTATTTAAG AAAGGTTTTT ATAGAGAAAA TTAAAATTAA 000720 000721 GAAGTCTTTG GAAGATGGGA AATATCTGAA GGGATAAAGG AGAGGATAAT GGGCATTCCT TTTGTGGAAG GTAGTATGAG 000800 000801 TTGGGATGTA CTCATAGCTG CGATGTTATG AGGatgcatt ggttcagcct ctcacttgtt gaccatcttc atccaccctg 000880 000881 attgttcagt atccttgctg tactgattgt ttaggatttt gaataGTAAT TATGGCATTT GTATGGTTTG GAAGCAGTAT 000960 000961 GATTTTACTG TTGCAGTTGG TTACTCTTCA ATCAAGGTTG CCAGATAAAg tcctctgttt ttatttgcta agcctggcaa 001040 001041 ccctaTCTTT GGTACAGTAG GGCTAAATCT CTACAGCGAA GGAGCTCAAA TCTGAACTGG CATCTATTCT TGTAGGTAAG 001120 001121 GGAAGCCATT AAAGGCAGTT GACCAAAGGG TTATGTAAAA AGAATTGTGT TTTAGCAGAA CAAAAATGAT AATGGTGTGC 001200 001201 TAGGATAGAT GATGAATGAG ATCTTCCTGA TCATCAGGAT AATTCCCATA TCTCTGGCTT TGAGAAGCAG TGGAGAAAAT 001280 001281 TTAGAAGATA AGCTTACATT TAGAAGACAA GCAACTTGGT Cggtgcggtg gctcacgcct gtaatcccgg cactttggga 001360 001361 ggctgaggtg ggtggatcac aaggtcagga gtttgaaacc agcctggcca ccatagtgaa acctcgtctc tactacaaaa 001440 001441 aaaaaaaaac aaaaaaaaac gaaaattagc tgggcatggg gcgggcacct gtagtcccag ctatgccact gcactccagc 001520 001521 ctgggcgaca ctagactagt gactcggtct caaaaaaaaa aaaaaagaaa aaGCAACTTA AGATTGGGCT TCATGAAGAC 001600 001601 AGAGACTAGA TTCTGTGGAT ATAGGATAAA TAACACATGG GCAGCTGTGA CTCAGAGCAT GGGTATGACA TGAGTGACCT 001680 001681 GTAATTGTTC TATGTGGAAT GGGTGCACTA GTCATCCAAT TAAGCCATGG AGAAGGACAG AGATGCTTGG CTCTCACTCA 001760 001761 CTAGTCTCTG AGTCAAAAGG GGCAGAGGAA GGGAAACTTT ATTAGGCCAA TAAGGAATAA ATGATGTGAA TGCATAGTTT 001840 001841 AATGTATGTT ACTATGTGAA CAAAAAATTG GGGTAGAGAA GAGTTTTCAC ACATTAGGAT GCAGATTAGG ATGAGATTTC 001920 001921 ATTTATAGAA GAGTAGTGGG TTTTGGCACC ATGGGATTGA TAAGGACAAG TATGATGGAT AAAGCAGTGT GTTGGCAGCA 002000 002001 TGGCAGGGGG ATACATTAAC AGAGGGGGTA TTAGGGTTGG GAGAGGAGTG TTGAGAAATT AGGATGGGAT GTCTGACCTG 002080 002081 GTGGGAGTAA TTTACAGAGT AGTAGGTCAG GAATACTGAG GGATGAGGAA TCAGAAGGCA AGTGGGCAGG TCCTCCTTGG 002160 002161 TAATCTAAAA GGAAAGTTGA TGGAGCTTCA TTGAAACAAA ATTGTCTTCC CTGGGTTTCA ACGAGGACCC TTCAGATGGA 002240 002241 ATTTAGGCTC TTTGTTGACA CCATTTGGAG AAAGTAGATG ATTCTTTGTG GTAAGTAGAA GGTAAATACT AAGTCAATGT 002320 002321 TTTTCTGATT TGGTTTTTCA CTTGACAGAG AGAGCAGGTG CTATAAATTA TACTAATGAC TAACATTGGG GAATTCTAGT 002400 002401 GGACCCTCTA AAGGTTATGG GCATAAGAAG AGGAAGGGAA ACATTTGaaa aggatgttgt catggaagct ttagttgaag 002480 002481 tgctgagaaa attgataaca tatttcaaag tgagatacaa aatcacgata caaaagtttg aaaggagTTA TCTgttctaa 002560 002561 atttaatgca agactgaatt ttgaccattg cacaggacta aataattact gagactgtca tgagacttga atgaattatg 002640 002641 ggtattttta ttaccctaga agtaccagaa acatcaagga tatcaagaaa gatctagcct attagagtgg attttaagat 002720 002721 atagaaataa attttactta tgattgtatt atgcaagtca tgattgttaa acataatgtt tacaCAAAAT AAAAACGGCA 002800 002801 GGCTGAGAAG TAGAATCTAT GGAAGAGAGT TGGAAGGGTT TTGGAATTTG GCAGATAAAA CATGAGATAG GAATAACATT 002880 002881 TGTAGAGACG AGTTCATCTA AAAGCAGATT AAAAGGAAAG CAGCAATTTC CTAGCACTGC AATATTCTCt gcgatggact 002960 002961 gaatgtttat gtaccctccc cctccaaatt tataggctga aatcttaact cctaatgtga aggtattagg aggcagaaac 003040 003041 tttgggggta attaggtaat aaagagactc tagagagctc tctcaccctc tttctgccat acaattaaag acagcagtct 003120 003121 gcaccttgga aggtgaccct caccagtacc caatcatgct ggcaccctaa tcctggaccg gtaccctcca gaaatataag 003200 003201 aaataaattt gtattgttca taagccaccc agcatatggt actttggcat agcagcctga actgactgag acaTTCTCCA 003280 003281 AAGGTATCAA TAGGTGAAGC ttaattttta taaagaaaaa taatttataa aattGGCTAT TTTGTATGAC CTTGGCATTC 003360 003361 AGGGTTTAAA ATATGTTAGA GT |
Predicted Small Protein
Name | NONHSAT119212_smProtein_1208:1468 |
Length | 87 |
Molecular weight | 9979.5407 |
Aromaticity | 0.093023255814 |
Instability index | 47.2965116279 |
Isoelectric point | 9.81707763672 |
Runs | 16 |
Runs residual | 0.0464248524818 |
Runs probability | 0.043720190779 |
Amino acid sequence | MMNEIFLIIRIIPISLALRSSGENLEDKLTFRRQATWSVRWLTPVIPALWEAEVGGSQGQ EFETSLATIVKPRLYYKKKKTKKNEN |
Secondary structure | LLLLEEEEEEEEEEELEELLLLLLHHHHHHHHHHHHHEEELLLLLLHHHHHHHLLLLLLL LEEHHHHEEELLEEEEEELLLLLLLL |
PRMN | - |
PiMo | - |