NONHSAT119954
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119954 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3370 nt |
Genomic location |
chr7-:31823141..31826510 |
Exon number |
1 |
Exons |
31823141..31826510 |
Genome context |
|
Sequence |
000001 ATAATATAAT ATATTTTCTT CTTTCTTAAC CTATGAGCAG AGACTTTGAT GATGGAAATT ACTTTGTAAC ATTCCCCATG 000080
000081 GAGCCTAGGA AAAACAATAG AAAAAAAGCA TGAAATCTTT TTCTCATAGT GAAATAGAGA AGATTCTAAG ATTGGAAATC 000160 000161 TGTGTATGTG GTGTTCTATC CCAAATAAAG AGAATTTAGG GAATTCAGGC AACAATTTTT TTCCTAATTG GAAACTTTGT 000240 000241 TCTGATCCTG AGATGCCCAC ACACCCCACA GGAGACGCAG TGCTGGCCCA CCACAGTGTT TGGAACACGG TCAGCATTCA 000320 000321 GGAAACACAT TCAAAATCGT CTAACTGAAT TCCACTATCC ACTTGTGAAT GCAAACAAAA TTCAAATTTC CCTGAAAATT 000400 000401 TATTCAACTT CTATATGCCA AGCACACTGC TAAAGGCTTA TCTTCTAAGT ATATGCAGGC ATACCCTACT CACACAAATA 000480 000481 GCTTATTACC AGAGATAGGA AATTGCAGGT AATTTGGGAG AAATTGTCAT AGCCAAATTT ATGGAAAAAA TAAAATAAAA 000560 000561 ACTTCTCTAT GGCCTCTTGA TTTAAGAAAA AAACAGAACA ATACAAAAAA AAAAAAGCAC TAAAACAGGA TTTATCTGAG 000640 000641 AATGTCTTTC CAAAAGGGAA GATGACACCA ATCTATATAA AACGTCAGTG GATTTACTGA GAATCCGAGT GGAAACTTTT 000720 000721 AAAACCTTAA ACAGACTCTC CTACAGCAAA TAGATTCTCT ATGTGCAGCA TGAGGAATCA CTGCATAGTT CTGCTCCACC 000800 000801 AATAATATGA TTGGTACAGC ACCAAACCAT GGCAAAGTTA GATGTTAAAG AACATAATGT TGCAATAATG ATGTTATATT 000880 000881 GGATCTTATG CATGAACAAA TGGAAAGTAA TAATTTATCA ACTGTGATCC ATGATTAAAG GCCTCATTAT CACTAAGAAA 000960 000961 ATGAACTTAA TGAAAAAAAT TATAATGAGC AATGACAATA TTCCTATAAA ACCTCCCTCT GGGTATCAAG AGACATATTA 001040 001041 CCTGCCAAGG CCAGATTTTA CTTTTTAAGG TTTCCTCTCT CTCACCAAAG ACACTAGTGG GCACAGAGGT GACACTAGAG 001120 001121 TTAGAATGTT ACCAGAGTCA TTTGCATTAG ACAGTTTATC TGATCATGAA CATGTTCCCA GGGAGATTAG AAAAATGGGA 001200 001201 AGCAGGCCTC TAAAGATCCT CCTTGGACAT TTGTAAAAAG GCTGGCTGCT TCTCCAGGAA TGTCTGAATT AAGCAAGAAT 001280 001281 TGTGCCACTG AAATAGCTTC TTGTTTTTAT ATTAAACAAG GAACGATTGT GCAGTGGATG ACCTGGACTG AAAGATGTAT 001360 001361 GATGGTCAAG TTTAAACATA TTAATTCCTG ATTGTTTTCT TAAATACCCA CCCTAGTCAT TTTTTGGAAA ATATTGCCAG 001440 001441 ACATATTTGA CATGAATTCA TGTTTATTCT GGCTTCTGTT CCCAAGCAGA AGTGGATTAA CCCTGGCAAT GGCTGGCTTC 001520 001521 ACTAACTGTA CTTGCACCCA GCCTGGGCTG CCATCTGCTC AGCCAGGAGA AGCAGGGAGT GGGGTGTGGG CCCTTTAAGT 001600 001601 TCGCTCAGGG CACACTCATT CAGTCTCCCC TGAGGAGACC TTGTCCCCCT TTGTGGGGTG AATGCTGGCT GTTGCAGGCC 001680 001681 AGAGGCAGTG CCAACTGGAG ACTCATCCTC TCAGCTTTGG TCAGCTTCAG CCACGTATTC TTCATGAGTG CTGGCTTCTG 001760 001761 AACCTGCAGG ATCATTTCTC AGTCAGTTTA TGGTGCAGGG TAATTCATTT AAAATAAAGC CCATTAAAAC CCCATGGCTA 001840 001841 TAGAATGGGT TTTAAATAGA TTGTCCTGGA GACACATCAT TGTATAGTCT TTGCTTCCCT CTCATGACCT ATCTTGGAGT 001920 001921 AGAATTTGTG TACTACTGTC CTTGTCTTTG AGTGGGTATA TGTGTGATGG TACAGAAATA CAGTCACATA TTATATTAAT 002000 002001 ATATATAGAT GGATAGGAAA AACCTACAGC CATAGGTATT GTCCAATAAC TGATTCTAGA GGTAGAACTA TAGAGTATAC 002080 002081 ATTTCCTTTT TTCTTGCTTT GATGATATTT TTATACAATT TTATATGCTA TAAAATTTTC AAAAATATAT TTGCTATTTT 002160 002161 CATTTGTAGA GCTTGGTTAG GTTTTTATCA GCTCTTGTGC CCACTGTACA ACCAGATTCC CCTCATCTAA TTTAAATGTC 002240 002241 TTCCCTTTTT CAAACTCTCC TTTATGTTTT CCTTTTTTTT TCCTCCCATT TTTCTACCCT TCACAAATTC CTTCTTTTGC 002320 002321 TTCTGTCCAG GTAACCCATT CTGCTTGCAG TATCATTTTA GCACGTACAA ACACAAAATA ATGGGAAAAA TAAAAGCACC 002400 002401 TTGTTCCATG CAATTCGTAT GGGAAAGTTT TGGGTGTCAA AGGTCGCTGG GGATAGATGG GGAGGCAGAA ATAGCTTGGG 002480 002481 AAAAGGAAGC AGGAAAAAAG GAAATCTTTA TGGGAAATCA ATTACCCAAA GCAAGGTGAG TCACCTAGAG GTGAATATGA 002560 002561 TGTTGTTATT GTCCTCCCTT AGTGTACAGC ACAGTTTTTG CTCTCACAGG GTTTTTCTCT TTAGGATGCG TAGCACCCTA 002640 002641 TGCATTAAAT ACATAGCATC CTAAAGACAC CCTACTCACC TTGAGTCTGT AGGCTCTTTC CTGATGAGGG CACTGGCCAT 002720 002721 ATATGAATGG AAAACTCAAC TCATCTCCTC AGCTTTAGAT GTTGCTGCTG TTCAGCTGGA TTTGTGAGAA ATATCTGGAT 002800 002801 TACTATCAAG AACATTTAGC AAGACTCAAA AGAGAGAGGC AAGCAGAACC AAAACCCAAA CCTCAACCAA TGACTAGCTG 002880 002881 AATAAACAAT TCTTTGGAGG AATAAGGAAG GTATTTCTGG ATGTATTCTG AGAATGCTCT TCCAAAAGGG AAGATGGTAA 002960 002961 TAATGGACTT GTTTTGATTT CATGGTTGTG ATAGAATGTA CTTCCATGAT GTGAAATACA CTTCTGGCAG ATAAAATGCA 003040 003041 GGTTGTAATT TGCATTTGTA CATCACAGGG TAAAAGAATG GCCATCCATT CTGAGGAAGA GTGTTCTGTT CTCTAAGATG 003120 003121 CTGCTTAACC AATGTTATCC AAATGCCATA GCATCATATC TCCAAATACA AGATTAAATC ATAAGGATTC ATGTAAAACA 003200 003201 GAGTATACTG AGCTGTTCTC AGAAAAATTA ATGATGTGTT TATTGTAAAT CTTTATTGCA CAGATGAGCC TGACAGTCCT 003280 003281 TCAATGTATA ATTTTCCCCC AGCATCTAGT AATGCATAAG TACTTGTATG TTCTTCTGAT TACCAAATAA AAACAATGAG 003360 003361 TTAACCTCTT |
Predicted Small Protein
Name | NONHSAT119954_smProtein_1661:1816 |
Length | 52 |
Molecular weight | 5994.996 |
Aromaticity | 0.078431372549 |
Instability index | 51.737254902 |
Isoelectric point | 7.81610107422 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0327189935034 |
Amino acid sequence | MLAVAGQRQCQLETHPLSFGQLQPRILHECWLLNLQDHFSVSLWCRVIHLK |
Secondary structure | LHHHLLLLEEELLLLLLLLLLLLHHHHHHHHHHHHLLLLLEEEEEEEEEEL |
PRMN | - |
PiMo | - |