NONHSAT121104
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121104 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1513 nt |
Genomic location |
chr7+:65216057..65217569 |
Exon number |
1 |
Exons |
65216057..65217569 |
Genome context |
|
Sequence |
000001 TCCCGGCCAC GGCGCGCCTG CTCTGGGCTC TCCGCGTGCC GCGTCGCTTT CTTTTCTTCC TCTGGAGCAG TTATGGCGGC 000080
000081 GGCGAAGACC CTGAACCCCA AGGCCAAGGT GGCCGGAGCG CAGGCGGCGC TGGCGTTCAA CATTAGCGGG GCGCGGGGTC 000160 000161 TGCAGGACGT GCTGAGGACC AACCTGGGGC CCAAAGGGAC CATAAAGATG TAAGGTGGGG CTGGCGGGAG GGCTGGGTGG 000240 000241 GCACCGCGCG CCGCTGCGCA CCTGGCGGGC CCAAGACCGC AGATGGGAGC CCGCTGCCTC GGGGCTCCGC AGCCACCCTT 000320 000321 CCTCGCGTCC TCCCGGGCCG GTCCTGTTCC CTGCTAAGCC CCACCGTTGC GTCCATTTCT TCCTGCGTCG ATGCCGTCTC 000400 000401 CATGGAGAAA AAAGCGGCTC TAGTGTGCGG CGTTCCCCGC CTTCTTGGGC TTCCAGACAC CCTGAGGACT CTGCACAATC 000480 000481 TCTGCGGGGA CGGGGTGGGC ACTACACTTG TCCTCCAGCC TGCGGGAGAT AACTAGCTCC ATATTCTCGG CTCCCTAAGA 000560 000561 TCGGGGAAAA GCCCGTTTTC TAATGGGACT TTTTAATTTA GTTTTCGTTG ATAACTAGCT CCATATCCCT GGCTCCCTGA 000640 000641 GATCTGGGAA AAGTCCTTTT TTGTTGtttg ttttggtttt ttgttgtttt tttttttgag acagagtctc gctctgtcac 000720 000721 ccaggctaga gtgcagtggc gcgatctcgg ctcactgcaa gctccgcctc ccgggttcat gtctttctcc tgcctcagtc 000800 000801 tcacgagtag ctgggactac aggcgcccgt caccacgccc agcttgcttt atttatttat ttatttattt attttgtatt 000880 000881 tttagtagag atggggtttc accgtgttag ccaggatggt ctcgatatcc tgacctcgag atccacccgc ctcggcctcc 000960 000961 caaagtgctg ggattacagg cgtgagccac cgcacccggc TGGAAAAGCC CATTTTCTAA TGGGACTTTT TAATTTAGTT 001040 001041 TTCGTTTTAA TTTCGTTTTT GTCACAATTT GATTGATTTC TGTCCCTTAA ACAGTCTTGT TTCTGGCGCT GGAGACATCA 001120 001121 AGCTTACTAA AGACAcagga gttgacgatc agccctggcc aacatggtga aactcagtct ctactaaaaa tacaaaaatt 001200 001201 agccgggcac ggtCCTGCAC AGTGCGCTGC TTCACGAAAT GGTGAGAGGT GCTCTGCTAG GTCAGAAATG TCTTGATTTT 001280 001281 CCGTAGAACT TTTGCTTTGT AGAAAGATTT GCAATGTCCA TTCTCAAGGT AGGAGAACAT TCAGAAGTGA CATGTAACAG 001360 001361 TGACAGTAAT AGTACTGACT GTGCCTGGAG TCTGACAGCC CTGTCTTTGA ATCCCTGCTT TTTTGCCATT CACAGTCTGG 001440 001441 GCTAAAGGAC TGTAATTGTA Cattaattat aataaaattt gaaaaattaa GGGTGGTTGA CACAATCACA TGG |
Predicted Small Protein
Name | NONHSAT121104_smProtein_890:1075 |
Length | 62 |
Molecular weight | 7020.0857 |
Aromaticity | 0.131147540984 |
Instability index | 51.7868852459 |
Isoelectric point | 9.18316650391 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0215888157065 |
Amino acid sequence | MGFHRVSQDGLDILTSRSTRLGLPKCWDYRREPPHPAGKAHFLMGLFNLVFVLISFLSQF D |
Secondary structure | LLEEEELLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHL L |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL L |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToo o |