NONHSAT122302
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122302 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1729 nt |
Genomic location |
chr7+:99667611..99669423 |
Exon number |
2 |
Exons |
99667611..99669315,99669400..99669423 |
Genome context |
|
Sequence |
000001 TTCTGTTTAA TAGTGCACTT CATTTATGCT ACAGGATGAG CAGGGTTGGG AAAACACAAT GGAAGGTCAT CCCGTCGGTT 000080
000081 GGGAAAACTC GGGGAGTGCC ATCCTCACCC AGCAACGAGC TCTGCTACCA GGCTCAGGCA CAGCCTGCCT TCTCTGGGCT 000160 000161 TCGttttttt gtttttttgt tttttttttc tcccttttGG GCTTTGCTCT TTCTCTGCAT TAATCTTCAG CTGCTGAAGA 000240 000241 GTCAGAGGTG GAGGCAGGAG TGGTCTGGCT CCTGGGGCTG GGTGTCAGAG GTGAGAGGGC AGGGCAAGCA GGCCAAGTGA 000320 000321 GCTCCTTGAA AGCATCCTTA CCCAGGCATT TAGAGAAAAT CATTTTCATC ATTGGAGTGG GAAGAGGACA AGAGAGGACA 000400 000401 GCAATCAGAG GCCAACGCTA AGTGCTTCTG ACCCTCTCCC TCACAGCCGG TTACTAGCTG TTTGGACAGA TTTGCCCATT 000480 000481 CAGCCCCAGG ACAACTGGGG GGGATGGCAG GGGGTCTGCT GGCAATATCA CCAGGTTTCT CTTGGAAACA TGGTCTGGCT 000560 000561 GCTCCAAGAG CCCTAAAGGA CACCATCATC ACAGATGATG ATTCTGGAAT CTCTTCTACC CTCAATAAAA TAATCCCTCA 000640 000641 ATGCCAAATT TCCATAATTA ACGAAATCAT GAAACAAAAC AGCATGTTTC TTACCGAAAC TTAAAGCTGG ACTAGGAACA 000720 000721 GTAGCTTTGA AATAGTCTCC CTTTACCCTC CCTAGCAAAT AACAGGACCC AGAGCGTCCT TTCCACTGCT GTCTGTGCTG 000800 000801 ACTACGCGGA CTCCAACTAA AGGAATCCAT CGAATTCTGT CCCGACTGTG CTTCCATCCC CACCTTGGAA AGGTTCCTCT 000880 000881 GCTGTGAGAA AAACAGTTTA GTGCAAACTC CTTTCCTAAA TGGGGTAACT GGTCCCAGAG CTGCTTTCTA TTCCCAGCAC 000960 000961 GCCATCCACT TGCCTTGACG CTTTCTAAGG CTGGTGTGAT TTCTGGGAAA ATTCAACGAT TTGCCCCATC TGCCCCATTC 001040 001041 TCTAAAATGA AAAGTCTGAG TTGAAAGGGA CACATCCTAA GCTGTTGAGA TTTATAGGGT AAGGCAAGAG CTCTTGAGAC 001120 001121 TCAGGGAAAG TGAGGAAAAT GGGTGTGTGG CTCTTTCACG TGGACTCTCT GATATTTAAC TCGGTCGTAA CTCTGAGGGA 001200 001201 GCTTTTGCTC ATGCCGATCC CATTCAAAGG CTTCTCTCCA GTGTGAATTC TCTGATGGCG AACAAGAGCC GAGCTGTACC 001280 001281 TGAAGGCTTT CCCACACTCA CTACATTCAT AGGGGTTCTC CCCGGTGTGG ATTCTTTGAT GCTGAATAAG GCCTGAACTG 001360 001361 TAGGTAAACT TTCCTCCACA TTCCATACAT TCGTAGGGCT TCTCTCCAGT GTGGATTCTC TGGTGCTGAT AGAGGTGTGA 001440 001441 GCTCTGGCTG AAGGCTTTCC CACATTCATT ACATTCATAG GGTTTTTCTC CAGTGTGGAT TCTCTGATGG TGAATAAGGG 001520 001521 TTGAGCTCCT GCTGAAGGCC TTCCCACATT CATTGCAGGC GTAGGGTTTC TCACCAGTGT GGATTCTCTG ATGGTGGGTG 001600 001601 AGGGTGGAGC TCCAGCTGAA GGTCTTCCCA CACTCATTAC ATTCATAGGG TTTCTCCCCC GTGTGGATCC TCCGATGCAG 001680 001681 AATGAGGGCA GAGCTACAGC TGAAGGCCTT CCCACACTCA TTACATTCA |
Predicted Small Protein
Name | NONHSAT122302_smProtein_35:319 |
Length | 95 |
Molecular weight | 10831.4365 |
Aromaticity | 0.170212765957 |
Instability index | 51.55 |
Isoelectric point | 10.6723022461 |
Runs | 13 |
Runs residual | 0.00948196114709 |
Runs probability | 0.0779354014648 |
Amino acid sequence | MSRVGKTQWKVIPSVGKTRGVPSSPSNELCYQAQAQPAFSGLRFFVFLFFFSPFWALLFL CINLQLLKSQRWRQEWSGSWGWVSEVRGQGKQAK |
Secondary structure | LLLLLLLEEEEELLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLEEEEEEELLHHHHHHHH HHHHHHHHHHHHHHHLLLLLEEEEEEELLLEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT TTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |